CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
fgenesh1_pg.C_scaffold_7000295
(
Sporobolomyces roseus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
fgenesh1_pg.C_scaffold_7000295
T227475_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.C_scaffold_7000295
Homeodomain
5
38
KNFRRQRLDIPTVTKLNAKQIRTWFANQRQRRGR
Links
Other
Homeodomain
family TFs
Other
Sporobolomyces roseus
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HmN_000921700
Hymenolepis microstoma
HmN_000921700
I
0.636
HmN_000922600
Hymenolepis microstoma
HmN_000922600
I
0.636
TsM_000760900
Taenia solium
TsM_000760900
I
0.636
TTAC_0000670801
Hydatigera taeniaeformis
TTAC_0000670801
I
0.636
HNAJ_0001179801
Hymenolepis nana
HNAJ_0001179801
I
0.634
ENSCAFG00000010422
Canis familiaris
ENSCAFG00000010422
I
0.626
ENSMPUG00000007638
Mustela putorius furo
ENSMPUG00000007638
I
0.626
ENSOANG00000029378
Ornithorhynchus anatinus
ENSOANG00000029378
I
0.626
ENSPTRG00000039451
Pan troglodytes
ENSPTRG00000039451
I
0.626
Irx3
Rattus norvegicus
ENSRNOG00000011533
I
0.626
ENSSSCG00000009724
Sus scrofa
ENSSSCG00000009724
I
0.626
SMAR007687
Strigamia maritima
SMAR007687
I
0.626
Myotis_brandtii_Irx1_10035798
Myotis brandtii
Myotis_brandtii_Irx1_10035798
I
0.626
Ogr18478
Ophisaurus gracilis
Ogr18478
I
0.626
L893_g31416
Steinernema glaseri
L893_g31416
I
0.626
SMTD_0002243001
Schistosoma mattheei
SMTD_0002243001
I
0.626
Aan_R003869
Calypte anna
Aan_R003869
I
0.618
Brh_R000015
Buceros rhinoceros
Brh_R000015
I
0.612
HelroG171177
Helobdella robusta
HelroG171177
I
0.610
IRX3
Dasypus novemcinctus
ENSDNOG00000012985
I
0.608
ENSMEUG00000004557
Macropus eugenii
ENSMEUG00000004557
I
0.608
D915_00592
Fasciola hepatica
D915_00592
I
0.608
ATEG_05203
Aspergillus terreus
CADATEAG00005116
I
0.606
PXEA_0002454601
Protopolystoma xenopodis
PXEA_0002454601
I
0.606
Aqu1.225495
Amphimedon queenslandica
Aqu1.225495
I
0.600