CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30000867m.g
(
Saccoglossus kowalevskii
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Sakowv30000867m.g
T227861_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hoxa6
M00494_2.00
Mus musculus
NWWATKRNN
NNYMATWWN
PBM
Berger et al.(2008)
Hoxa6_1040
0.266
1.000
HOXA6
M04974_2.00
Homo sapiens
NNTAATKRVN
NBYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_HT-SELEX
0.266
1.000
HOXA6
M04975_2.00
Homo sapiens
NNTAATKRBN
NVYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_1
0.266
1.000
HOXA6
M04976_2.00
Homo sapiens
NTAAYGRY
RYCRTTAN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_2
0.266
1.000
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23946472_peptide
Homeodomain
149
182
RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIA
Links
Other
Homeodomain
family TFs
Other
Saccoglossus kowalevskii
TFs
199 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HOXB8
Monodelphis domestica
ENSMODG00000009593
N
0.761
WUBG_08134
Wuchereria bancrofti
WUBG_08134
N
0.755
EEL_0000283301
Elaeophora elaphi
EEL_0000283301
N
0.755
L893_g7450
Steinernema glaseri
L893_g7450
N
0.755
Hoxb8
Mus musculus
ENSMUSG00000056648
D
0.743
PXEA_0000194701
Protopolystoma xenopodis
PXEA_0000194701
N
0.735
HPLM_0001305101
Haemonchus placei
HPLM_0001305101
N
0.730
AFUN010407
Anopheles funestus
AFUN010407
N
0.729
Sjc_0026350
Schistosoma japonicum
Sjc_0026350
N
0.722
ACAC_0001096101
Angiostrongylus cantonensis
ACAC_0001096101
N
0.722
ACOC_0000018801
Angiostrongylus costaricensis
ACOC_0000018801
N
0.722
ANCCAN_01052
Ancylostoma caninum
ANCCAN_01052
N
0.722
L898_g696
Steinernema monticolum
L898_g696
N
0.722
SMTD_0002268201
Schistosoma mattheei
SMTD_0002268201
N
0.722
TELCIR_03058
Teladorsagia circumcincta
TELCIR_03058
N
0.722
TELCIR_25656
Teladorsagia circumcincta
TELCIR_25656
N
0.722
HPBE_0000692601
Heligmosomoides bakeri
HPBE_0000692601
N
0.704
MESCA004913
Megaselia scalaris
MESCA004913
N
0.697
MhA1_Contig303.frz3.gene9
Meloidogyne hapla
MhA1_Contig303.frz3.gene9
N
0.662
genemark-nMf.1.1.scaf08601-processed-gene-0.1
Meloidogyne floridensis
genemark-nMf.1.1.scaf08601-processed-gene-0.1
N
0.651
BGLB005976
Biomphalaria glabrata
BGLB005976
I
0.650
OFLC_0001568201
Onchocerca flexuosa
OFLC_0001568201
I
0.650
Crx
Mus musculus
ENSMUSG00000041578
D
0.647
nDi.2.2.2.g11780
Dirofilaria immitis
nDi.2.2.2.g11780
I
0.645
Otx2
Mus musculus
ENSMUSG00000021848
D
0.644
FVEG_06689
Fusarium verticillioides
FVEG_06689
N
0.644
MhA1_Contig290.frz3.gene10
Meloidogyne hapla
MhA1_Contig290.frz3.gene10
I
0.644
ACEP26487
Atta cephalotes
ACEP26487
I
0.643
ENSCING00000013809
Ciona intestinalis
ENSCING00000013809
I
0.643
ENSMEUG00000002781
Macropus eugenii
ENSMEUG00000002781
I
0.643
GB40331
Apis mellifera
GB40331
I
0.643
GB42226
Apis mellifera
GB42226
I
0.643
ISCW017713
Ixodes scapularis
ISCW017713
I
0.643
SINV23302
Solenopsis invicta
SINV23302
I
0.643
e_gw.543.9.1
Branchiostoma floridae
e_gw.543.9.1
N
0.643
e_gw.814.10.1
Branchiostoma floridae
e_gw.814.10.1
I
0.643
e_gw.85.119.1
Branchiostoma floridae
e_gw.85.119.1
N
0.643
LDEC010767
Leptinotarsa decemlineata
LDEC010767
I
0.643
AALB000327
Anopheles albimanus
AALB000327
I
0.643
AARA005138
Anopheles arabiensis
AARA005138
I
0.643
ACHR004287
Anopheles christyi
ACHR004287
I
0.643
ADIR006768
Anopheles dirus
ADIR006768
I
0.643
AEPI004828
Anopheles epiroticus
AEPI004828
I
0.643
AFUN001295
Anopheles funestus
AFUN001295
I
0.643
AMAM009154
Anopheles maculatus
AMAM009154
I
0.643
AMEC016887
Anopheles melas
AMEC016887
I
0.643
AMIN006279
Anopheles minimus
AMIN006279
I
0.643
AQUA000678
Anopheles quadriannulatus
AQUA000678
I
0.643
BGLB001705
Biomphalaria glabrata
BGLB001705
I
0.643
ANCDUO_09759
Ancylostoma duodenale
ANCDUO_09759
I
0.643
CGOC_0000387301
Cylicostephanus goldi
CGOC_0000387301
I
0.643
GPUH_0000555401
Gongylonema pulchrum
GPUH_0000555401
N
0.643
Pitx1
Mus musculus
ENSMUSG00000021506
D
0.640
RPRC011667
Rhodnius prolixus
RPRC011667
I
0.636
CLEC007143
Cimex lectularius
CLEC007143
I
0.636
LCUP010259
Lucilia cuprina
LCUP010259
I
0.636
PXEA_0000709901
Protopolystoma xenopodis
PXEA_0000709901
I
0.636
EVEC_0000238601
Enterobius vermicularis
EVEC_0000238601
I
0.635
L898_g16919
Steinernema monticolum
L898_g16919
N
0.635
TCNE_0000805901
Toxocara canis
TCNE_0000805901
I
0.635
GPLIN_001127900
Globodera pallida
GPLIN_001127900
I
0.632
ENSTGUG00000004229
Taeniopygia guttata
ENSTGUG00000004229
I
0.630
D915_08446
Fasciola hepatica
D915_08446
I
0.630
PXEA_0001806501
Protopolystoma xenopodis
PXEA_0001806501
N
0.630
MESCA012524
Megaselia scalaris
MESCA012524
I
0.629
Smp_150810
Schistosoma mansoni
Smp_150810
I
0.629
Sjc_0051960
Schistosoma japonicum
Sjc_0051960
I
0.629
A_07699
Schistosoma haematobium
A_07699
I
0.629
GPLIN_000434400
Globodera pallida
GPLIN_000434400
I
0.629
SCUD_0000012401
Schistosoma curassoni
SCUD_0000012401
I
0.629
SMTD_0001421101
Schistosoma mattheei
SMTD_0001421101
I
0.629
SROB_0000845601
Schistosoma rodhaini
SROB_0000845601
I
0.629
PITX1
Homo sapiens
ENSG00000069011
D
0.627
Pitx3
Mus musculus
ENSMUSG00000025229
D
0.627
MESCA003695
Megaselia scalaris
MESCA003695
I
0.627
AMEC011816
Anopheles melas
AMEC011816
I
0.627
Hba_14752
Heterorhabditis bacteriophora
Hba_14752
I
0.626
L893_g29073
Steinernema glaseri
L893_g29073
I
0.626
CRX
Homo sapiens
ENSG00000105392
D
0.625
SROB_0000568701
Schistosoma rodhaini
SROB_0000568701
I
0.625
Sjc_0039470
Schistosoma japonicum
Sjc_0039470
I
0.624
MhA1_Contig1070.frz3.gene23
Meloidogyne hapla
MhA1_Contig1070.frz3.gene23
I
0.624
SROB_0001170301
Schistosoma rodhaini
SROB_0001170301
I
0.624
BARX2
Tupaia belangeri
ENSTBEG00000000641
I
0.623
BARX2
Vicugna pacos
ENSVPAG00000010480
I
0.623
GPLIN_000644800
Globodera pallida
GPLIN_000644800
I
0.623
NBR_0000086401
Nippostrongylus brasiliensis
NBR_0000086401
I
0.621
SVUK_0000982701
Strongylus vulgaris
SVUK_0000982701
I
0.620
SMTD_0000630101
Schistosoma mattheei
SMTD_0000630101
I
0.618
ENSAPLG00000000623
Anas platyrhynchos
ENSAPLG00000000623
I
0.617
SNAPOd2T00020544001
Oikopleura dioica
SNAPOd2T00020544001
I
0.617
ANCCEY_13939
Ancylostoma ceylanicum
ANCCEY_13939
I
0.617
BTMF_0000212801
Brugia timori
BTMF_0000212801
I
0.617
ML145813a
Mnemiopsis leidyi
ML145813a
I
0.616
DME_0000391201
Dracunculus medinensis
DME_0000391201
I
0.616
HPLM_0000640301
Haemonchus placei
HPLM_0000640301
I
0.616
nAv.1.0.1.g02632
Acanthocheilonema viteae
nAv.1.0.1.g02632
I
0.616
OESDEN_08182
Oesophagostomum dentatum
OESDEN_08182
I
0.616
TELCIR_15720
Teladorsagia circumcincta
TELCIR_15720
I
0.616
genemark-nMf.1.1.scaf05885-processed-gene-0.2
Meloidogyne floridensis
genemark-nMf.1.1.scaf05885-processed-gene-0.2
I
0.614
TMUE_s0047002700
Trichuris muris
TMUE_s0047002700
I
0.614
CapteG187461
Capitella teleta
CapteG187461
I
0.612
Rhox2g
Mus musculus
ENSMUSG00000079629
N
0.612
Rhox2c
Mus musculus
ENSMUSG00000079637
N
0.612
ISCW005275
Ixodes scapularis
ISCW005275
I
0.612
HOXB3
Echinops telfairi
ENSETEG00000007761
I
0.611
SNAPOd2T00009387001
Oikopleura dioica
SNAPOd2T00009387001
I
0.611
ENSECAG00000023678
Equus caballus
ENSECAG00000023678
I
0.610
Alligator_sinensis_CCG010661.1
Alligator sinensis
Alligator_sinensis_CCG010661.1
I
0.610
D915_06583
Fasciola hepatica
D915_06583
N
0.610
ENSMICG00000004221
Microcebus murinus
ENSMICG00000004221
I
0.606
AEPI008243
Anopheles epiroticus
AEPI008243
I
0.605
TMUE_s0096002400
Trichuris muris
TMUE_s0096002400
I
0.603
lmx1a
Danio rerio
ENSDARG00000020354
I
0.602
ENSPMAG00000010239
Petromyzon marinus
ENSPMAG00000010239
I
0.602
ENSMEUG00000003167
Macropus eugenii
ENSMEUG00000003167
I
0.601
ENSOANG00000031547
Ornithorhynchus anatinus
ENSOANG00000031547
I
0.601
PXEA_0001880101
Protopolystoma xenopodis
PXEA_0001880101
I
0.601
SPER_0003668801
Spirometra erinaceieuropaei
SPER_0003668801
I
0.601
GH24924
Drosophila grimshawi
FBgn0132379
I
0.600
MESCA002384
Megaselia scalaris
MESCA002384
I
0.600
SNAPOd2T00004995001
Oikopleura dioica
SNAPOd2T00004995001
N
0.600
hoxd9.S
Xenopus laevis
XB-GENE-485796
I
0.600
AMIN005749
Anopheles minimus
AMIN005749
I
0.600
LDEC001243
Leptinotarsa decemlineata
LDEC001243
I
0.599
SCUD_0002251201
Schistosoma curassoni
SCUD_0002251201
I
0.599
TRE_0001706901
Trichobilharzia regenti
TRE_0001706901
I
0.599
HOXB6
Anolis carolinensis
ENSACAG00000006474
I
0.266
ENSAMEG00000005892
Ailuropoda melanoleuca
ENSAMEG00000005892
I
0.266
ENSAMXG00000015991
Astyanax mexicanus
ENSAMXG00000015991
I
0.266
HOXA6
Bos taurus
ENSBTAG00000024341
I
0.266
HOXA6
Canis familiaris
ENSCAFG00000002953
I
0.266
HOXA6
Choloepus hoffmanni
ENSCHOG00000009037
I
0.266
HOXA6
Callithrix jacchus
ENSCJAG00000008082
I
0.266
ENSCPOG00000020838
Cavia porcellus
ENSCPOG00000020838
I
0.266
ENSCSAG00000014287
Chlorocebus sabaeus
ENSCSAG00000014287
I
0.266
hoxb6a
Danio rerio
ENSDARG00000010630
I
0.266
HOXA6
Dasypus novemcinctus
ENSDNOG00000001633
I
0.266
Hoxa6
Dipodomys ordii
ENSDORG00000006319
I
0.266
HOXA6
Equus caballus
ENSECAG00000000575
I
0.266
ENSFALG00000009450
Ficedula albicollis
ENSFALG00000009450
I
0.266
HOXA6
Felis catus
ENSFCAG00000027995
I
0.266
HOXA6
Homo sapiens
ENSG00000106006
D
0.266
ENSGACG00000005623
Gasterosteus aculeatus
ENSGACG00000005623
I
0.266
ENSGALG00000011059
Gallus gallus
ENSGALG00000011059
I
0.266
ENSGALG00000026434
Gallus gallus
ENSGALG00000026434
I
0.266
ENSGALG00000028908
Gallus gallus
ENSGALG00000028908
I
0.266
HOXA6
Gorilla gorilla
ENSGGOG00000002218
I
0.266
ENSGMOG00000009870
Gadus morhua
ENSGMOG00000009870
I
0.266
ENSGMOG00000019983
Gadus morhua
ENSGMOG00000019983
I
0.266
ENSLACG00000017339
Latimeria chalumnae
ENSLACG00000017339
I
0.266
HOXA6
Loxodonta africana
ENSLAFG00000006281
I
0.266
ENSLOCG00000013443
Lepisosteus oculatus
ENSLOCG00000013443
I
0.266
ENSMEUG00000015407
Macropus eugenii
ENSMEUG00000015407
I
0.266
ENSMICG00000000493
Microcebus murinus
ENSMICG00000000493
I
0.266
HOXA6
Myotis lucifugus
ENSMLUG00000014517
I
0.266
ENSMMUG00000013457
Macaca mulatta
ENSMMUG00000013457
I
0.266
ENSMODG00000000472
Monodelphis domestica
ENSMODG00000000472
I
0.266
ENSMPUG00000004779
Mustela putorius furo
ENSMPUG00000004779
I
0.266
Hoxa6
Mus musculus
ENSMUSG00000043219
D
0.266
ENSNLEG00000014990
Nomascus leucogenys
ENSNLEG00000014990
I
0.266
HOXB6
Ornithorhynchus anatinus
ENSOANG00000009168
I
0.266
ENSOARG00000009758
Ovis aries
ENSOARG00000009758
I
0.266
HOXA6
Oryctolagus cuniculus
ENSOCUG00000029344
I
0.266
HOXA6
Otolemur garnettii
ENSOGAG00000012384
I
0.266
ENSONIG00000006185
Oreochromis niloticus
ENSONIG00000006185
I
0.266
HOXA6
Ochotona princeps
ENSOPRG00000010431
I
0.266
ENSORLG00000017036
Oryzias latipes
ENSORLG00000017036
I
0.266
ENSPANG00000013799
Papio anubis
ENSPANG00000013799
I
0.266
HOXA6
Procavia capensis
ENSPCAG00000015603
I
0.266
ENSPFOG00000001956
Poecilia formosa
ENSPFOG00000001956
I
0.266
ENSPPYG00000017702
Pongo abelii
ENSPPYG00000017702
I
0.266
ENSPSIG00000007278
Pelodiscus sinensis
ENSPSIG00000007278
I
0.266
HOXA6
Pan troglodytes
ENSPTRG00000039535
I
0.266
HOXA6
Pteropus vampyrus
ENSPVAG00000002491
I
0.266
LOC100909604
Rattus norvegicus
ENSRNOG00000048917
I
0.266
Hoxa6
Rattus norvegicus
ENSRNOG00000060066
I
0.266
ENSSHAG00000016714
Sarcophilus harrisii
ENSSHAG00000016714
I
0.266
ENSSSCG00000016702
Sus scrofa
ENSSSCG00000016702
I
0.266
ENSSTOG00000022675
Ictidomys tridecemlineatus
ENSSTOG00000022675
I
0.266
ENSTBEG00000010861
Tupaia belangeri
ENSTBEG00000010861
I
0.266
ENSTGUG00000002913
Taeniopygia guttata
ENSTGUG00000002913
I
0.266
ENSTNIG00000001758
Tetraodon nigroviridis
ENSTNIG00000001758
I
0.266
ENSTRUG00000001069
Takifugu rubripes
ENSTRUG00000001069
I
0.266
ENSTRUG00000009487
Takifugu rubripes
ENSTRUG00000009487
I
0.266
HOXA6
Tursiops truncatus
ENSTTRG00000006778
I
0.266
ENSXMAG00000002841
Xiphophorus maculatus
ENSXMAG00000002841
I
0.266
Aan_R001086
Calypte anna
Aan_R001086
I
0.266
Afo_R003421
Aptenodytes forsteri
Afo_R003421
I
0.266
Alligator_sinensis_CCG010191.1
Alligator sinensis
Alligator_sinensis_CCG010191.1
I
0.266
Alligator_sinensis_CCG014472.1
Alligator sinensis
Alligator_sinensis_CCG014472.1
I
0.266
Alligator_sinensis_CCG014472.2
Alligator sinensis
Alligator_sinensis_CCG014472.2
I
0.266
Brh_R009844
Buceros rhinoceros
Brh_R009844
I
0.266
Cmyd_10015817
Chelonia mydas
Cmyd_10015817
I
0.266
ENSP00000222728-D1
Bos grunniens
ENSP00000222728-D1
I
0.266
ENSP00000222728
Macaca fascicularis
ENSP00000222728
I
0.266
Gfo_R015841
Geospiza fortis
Gfo_R015841
I
0.266
Ogr12576
Ophisaurus gracilis
Ogr12576
I
0.266
Pvit_18298
Pogona vitticeps
Pvit_18298
I
0.266