CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10003464m.g
(
Capsella rubella
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Carubv10003464m.g
T228279_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN
NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.780
0.825
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.780
0.825
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.780
0.825
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.747
0.702
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.679
0.596
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.679
0.596
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.659
0.579
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.659
0.579
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10003464m
Homeodomain
34
90
NKKKKRLTSEQLASLEVSFQEDIKLDSDRKLKLSKELGLHPRQTAVWFQNRRARWKV
Links
Other
Homeodomain
family TFs
Other
Capsella rubella
TFs
187 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29815.m000499
Ricinus communis
29815.m000499
I
0.769
29822.m003500
Ricinus communis
29822.m003500
I
0.679
29983.m003123
Ricinus communis
29983.m003123
I
0.687
ATHB22
Arabidopsis lyrata
Al_scaffold_0004_2163
I
0.774
Al_scaffold_0006_290
Arabidopsis lyrata
Al_scaffold_0006_290
I
0.744
AMTR_s00027p00144540
Amborella trichopoda
AMTR_s00027p00144540
I
0.677
Aquca_009_01021
Aquilegia coerulea
Aquca_009_01021
I
0.731
ATHB-22
Arabidopsis thaliana
AT2G36610
D
0.747
ATHB-20
Arabidopsis thaliana
AT3G01220
D
0.659
ATHB-51
Arabidopsis thaliana
AT5G03790
D
0.780
HAT7
Arabidopsis thaliana
AT5G15150
I
0.679
ATHB-52
Arabidopsis thaliana
AT5G53980
I
0.652
Bo12274s010
Brassica oleracea
Bo12274s010
I
0.655
Bo1g158730
Brassica oleracea
Bo1g158730
I
0.659
Bo2g005230
Brassica oleracea
Bo2g005230
I
0.764
Bo2g012410
Brassica oleracea
Bo2g012410
I
0.679
Bo2g042250
Brassica oleracea
Bo2g042250
I
0.652
Bo3g002560
Brassica oleracea
Bo3g002560
I
0.776
Bo3g010120
Brassica oleracea
Bo3g010120
I
0.679
Bo4g034490
Brassica oleracea
Bo4g034490
I
0.748
Bo9g165360
Brassica oleracea
Bo9g165360
I
0.679
Bo9g181710
Brassica oleracea
Bo9g181710
I
0.678
Bo9g181720
Brassica oleracea
Bo9g181720
I
0.780
Bostr.1460s0094
Boechera stricta
Bostr.1460s0094
I
0.659
Bostr.2128s0069
Boechera stricta
Bostr.2128s0069
I
0.742
Bostr.2128s0071
Boechera stricta
Bostr.2128s0071
I
0.780
Bostr.23794s0432
Boechera stricta
Bostr.23794s0432
I
0.789
Bostr.26833s0878
Boechera stricta
Bostr.26833s0878
I
0.652
Bostr.2902s0249
Boechera stricta
Bostr.2902s0249
I
0.679
Bra005259
Brassica rapa
Bra005259
I
0.748
Bra006285
Brassica rapa
Bra006285
I
0.679
Bra008717
Brassica rapa
Bra008717
I
0.679
Bra009510
Brassica rapa
Bra009510
I
0.780
Bra022687
Brassica rapa
Bra022687
I
0.652
Bra023506
Brassica rapa
Bra023506
I
0.679
Bra028820
Brassica rapa
Bra028820
I
0.764
Bra039135
Brassica rapa
Bra039135
I
0.659
BRADI4G35910
Brachypodium distachyon
BRADI4G35910
I
0.673
Cagra.0154s0024
Capsella grandiflora
Cagra.0154s0024
I
0.697
Cagra.0154s0025
Capsella grandiflora
Cagra.0154s0025
I
0.780
Cagra.0228s0052
Capsella grandiflora
Cagra.0228s0052
I
0.789
Cagra.0463s0004
Capsella grandiflora
Cagra.0463s0004
I
0.825
Cagra.1036s0042
Capsella grandiflora
Cagra.1036s0042
I
0.679
Cagra.1390s0021
Capsella grandiflora
Cagra.1390s0021
I
0.659
Cagra.4622s0007
Capsella grandiflora
Cagra.4622s0007
I
0.652
Carubv10001498m.g
Capsella rubella
Carubv10001498m.g
I
0.679
Carubv10002440m.g
Capsella rubella
Carubv10002440m.g
I
0.780
Carubv10002831m.g
Capsella rubella
Carubv10002831m.g
I
0.695
Carubv10014214m.g
Capsella rubella
Carubv10014214m.g
I
0.659
Carubv10024148m.g
Capsella rubella
Carubv10024148m.g
I
0.789
Carubv10027280m.g
Capsella rubella
Carubv10027280m.g
I
0.652
cassava13234.valid.m1
Manihot esculenta
cassava13234.valid.m1
I
0.679
cassava14646.m1
Manihot esculenta
cassava14646.m1
I
0.769
cassava34082.m1
Manihot esculenta
cassava34082.m1
I
0.765
cassava39955.m1
Manihot esculenta
cassava39955.m1
I
0.679
Ca_00750
Cicer arietinum
Ca_00750
I
0.644
Ca_10527
Cicer arietinum
Ca_10527
I
0.679
Ca_17608
Cicer arietinum
Ca_17608
I
0.646
Ca_20151
Cicer arietinum
Ca_20151
I
0.689
chr2.LjT39I02.10.nc
Lotus japonicus
chr2.LjT39I02.10.nc
I
0.679
Ciclev10009522m.g
Citrus clementina
Ciclev10009522m.g
I
0.623
Ciclev10012352m.g
Citrus clementina
Ciclev10012352m.g
I
0.679
Ciclev10012525m.g
Citrus clementina
Ciclev10012525m.g
I
0.759
Cla010510
Citrullus lanatus
Cla010510
I
0.679
Cla018017
Citrullus lanatus
Cla018017
I
0.769
Cla018641
Citrullus lanatus
Cla018641
I
0.761
Cucsa.125070
Cucumis sativus
Cucsa.125070
I
0.761
Cucsa.158420
Cucumis sativus
Cucsa.158420
I
0.679
Cucsa.378700
Cucumis sativus
Cucsa.378700
I
0.769
Eucgr.A01421
Eucalyptus grandis
Eucgr.A01421
I
0.670
Eucgr.A01575
Eucalyptus grandis
Eucgr.A01575
I
0.705
Eucgr.I01934
Eucalyptus grandis
Eucgr.I01934
I
0.671
Eucgr.I02255
Eucalyptus grandis
Eucgr.I02255
I
0.661
evm.TU.supercontig_14.18
Carica papaya
evm.TU.supercontig_14.18
I
0.679
evm.TU.supercontig_5.106
Carica papaya
evm.TU.supercontig_5.106
I
0.765
evm.TU.supercontig_80.1
Carica papaya
evm.TU.supercontig_80.1
I
0.646
fgenesh1_pg.scaffold_143000038
Physcomitrella patens
fgenesh1_pg.scaffold_143000038
I
0.602
ATHB51
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6000249
I
0.780
ATHB-3
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6001192
I
0.679
ATHB52
Arabidopsis lyrata
fgenesh2_kg.8__1293__AT5G53980.1
I
0.652
gene18656-v1.0-hybrid
Fragaria vesca
gene18656-v1.0-hybrid
I
0.666
gene24976-v1.0-hybrid
Fragaria vesca
gene24976-v1.0-hybrid
I
0.605
gene28322-v1.0-hybrid
Fragaria vesca
gene28322-v1.0-hybrid
I
0.679
gene30097-v1.0-hybrid
Fragaria vesca
gene30097-v1.0-hybrid
I
0.754
GLYMA03G34710
Glycine max
GLYMA03G34710
I
0.644
GLYMA06G35050
Glycine max
GLYMA06G35050
I
0.679
GLYMA09G37410
Glycine max
GLYMA09G37410
I
0.679
GLYMA10G07440
Glycine max
GLYMA10G07440
I
0.765
GLYMA13G05270
Glycine max
GLYMA13G05270
I
0.646
GLYMA13G21330
Glycine max
GLYMA13G21330
I
0.765
GLYMA13G23890
Glycine max
GLYMA13G23890
I
0.599
GLYMA18G49290
Glycine max
GLYMA18G49290
I
0.679
GLYMA19G02490
Glycine max
GLYMA19G02490
I
0.679
GLYMA19G37380
Glycine max
GLYMA19G37380
I
0.644
Gorai.001G256300
Gossypium raimondii
Gorai.001G256300
I
0.679
Gorai.002G067100
Gossypium raimondii
Gorai.002G067100
I
0.626
Gorai.002G244000
Gossypium raimondii
Gorai.002G244000
I
0.796
Gorai.002G244200
Gossypium raimondii
Gorai.002G244200
I
0.769
Gorai.006G022100
Gossypium raimondii
Gorai.006G022100
I
0.679
Gorai.007G206000
Gossypium raimondii
Gorai.007G206000
I
0.607
Gorai.009G409600
Gossypium raimondii
Gorai.009G409600
I
0.765
Gorai.012G055400
Gossypium raimondii
Gorai.012G055400
I
0.603
GRMZM2G034113
Zea mays
GRMZM2G034113
I
0.705
GRMZM2G041462
Zea mays
GRMZM2G041462
I
0.705
GSMUA_Achr10G18860_001
Musa acuminata
GSMUA_Achr10G18860_001
I
0.679
GSMUA_Achr4G00550_001
Musa acuminata
GSMUA_Achr4G00550_001
I
0.679
GSMUA_Achr6G10660_001
Musa acuminata
GSMUA_Achr6G10660_001
I
0.673
GSMUA_Achr6G36450_001
Musa acuminata
GSMUA_Achr6G36450_001
I
0.679
LjSGA_022706.2
Lotus japonicus
LjSGA_022706.2
I
0.761
Lus10003492.g
Linum usitatissimum
Lus10003492.g
I
0.626
Lus10008641.g
Linum usitatissimum
Lus10008641.g
I
0.765
Lus10013103.g
Linum usitatissimum
Lus10013103.g
I
0.626
Lus10035583.g
Linum usitatissimum
Lus10035583.g
I
0.765
MDP0000119544
Malus domestica
MDP0000119544
I
0.768
MDP0000124827
Malus domestica
MDP0000124827
I
0.679
MDP0000134241
Malus domestica
MDP0000134241
I
0.768
MDP0000146339
Malus domestica
MDP0000146339
I
0.624
MDP0000311522
Malus domestica
MDP0000311522
I
0.666
MDP0000316497
Malus domestica
MDP0000316497
I
0.646
MDP0000737128
Malus domestica
MDP0000737128
I
0.679
MDP0000738604
Malus domestica
MDP0000738604
I
0.768
MDP0000909160
Malus domestica
MDP0000909160
I
0.624
mgf013301m
Mimulus guttatus
mgf013301m
I
0.626
mgf019824m
Mimulus guttatus
mgf019824m
I
0.757
mgf022748m
Mimulus guttatus
mgf022748m
I
0.764
MTR_1g061660
Medicago truncatula
MTR_1g061660
I
0.707
MTR_6g011610
Medicago truncatula
MTR_6g011610
I
0.679
MTR_7g103340
Medicago truncatula
MTR_7g103340
I
0.648
MTR_8g026960
Medicago truncatula
MTR_8g026960
I
0.646
orange1.1g035661m.g
Citrus sinensis
orange1.1g035661m.g
I
0.623
orange1.1g040769m.g
Citrus sinensis
orange1.1g040769m.g
I
0.759
orange1.1g041877m.g
Citrus sinensis
orange1.1g041877m.g
I
0.679
Pavir.Ba01249
Panicum virgatum
Pavir.Ba01249
I
0.705
Pavir.Bb02633
Panicum virgatum
Pavir.Bb02633
I
0.705
Pavir.Hb01447
Panicum virgatum
Pavir.Hb01447
I
0.665
PGSC0003DMG400002692
Solanum tuberosum
PGSC0003DMG400002692
I
0.768
PGSC0003DMG400017775
Solanum tuberosum
PGSC0003DMG400017775
I
0.611
PGSC0003DMG400017776
Solanum tuberosum
PGSC0003DMG400017776
I
0.611
PGSC0003DMG400017787
Solanum tuberosum
PGSC0003DMG400017787
I
0.611
PGSC0003DMG400021278
Solanum tuberosum
PGSC0003DMG400021278
I
0.659
PGSC0003DMG400031777
Solanum tuberosum
PGSC0003DMG400031777
I
0.668
PGSC0003DMG402012439
Solanum tuberosum
PGSC0003DMG402012439
I
0.615
PK15535.1
Cannabis sativa
PK15535.1
I
0.754
PK20392.1
Cannabis sativa
PK20392.1
D
0.679
Pm011328
Prunus mume
Pm011328
I
0.626
Pm015861
Prunus mume
Pm015861
I
0.679
Pm018314
Prunus mume
Pm018314
I
0.699
Pm026270
Prunus mume
Pm026270
I
0.765
POPTR_0001s40540
Populus trichocarpa
POPTR_0001s40540
I
0.626
POPTR_0006s11890
Populus trichocarpa
POPTR_0006s11890
I
0.769
POPTR_0007s01370
Populus trichocarpa
POPTR_0007s01370
I
0.625
POPTR_0011s11510
Populus trichocarpa
POPTR_0011s11510
I
0.626
POPTR_0017s04820
Populus trichocarpa
POPTR_0017s04820
I
0.665
POPTR_0017s11800
Populus trichocarpa
POPTR_0017s11800
I
0.679
PRUPE_ppa010647mg
Prunus persica
PRUPE_ppa010647mg
I
0.699
PRUPE_ppa015952mg
Prunus persica
PRUPE_ppa015952mg
I
0.765
PRUPE_ppa017711mg
Prunus persica
PRUPE_ppa017711mg
I
0.626
PRUPE_ppa020465mg
Prunus persica
PRUPE_ppa020465mg
I
0.679
SapurV1A.0207s0080
Salix purpurea
SapurV1A.0207s0080
I
0.626
SapurV1A.0226s0110
Salix purpurea
SapurV1A.0226s0110
I
0.756
SapurV1A.1260s0050
Salix purpurea
SapurV1A.1260s0050
I
0.679
SapurV1A.2065s0030
Salix purpurea
SapurV1A.2065s0030
I
0.679
SapurV1A.2554s0010
Salix purpurea
SapurV1A.2554s0010
I
0.665
SapurV1A.3101s0010
Salix purpurea
SapurV1A.3101s0010
I
0.669
Sb02g030660
Sorghum bicolor
Sb02g030660
I
0.705
ATHB20
Arabidopsis lyrata
scaffold_300109.1
I
0.659
Si030983m.g
Setaria italica
Si030983m.g
I
0.705
Solyc02g077590.1
Solanum lycopersicum
Solyc02g077590.1
I
0.668
Solyc03g034110.2
Solanum lycopersicum
Solyc03g034110.2
I
0.611
Solyc03g034120.2
Solanum lycopersicum
Solyc03g034120.2
I
0.633
Solyc03g034130.2
Solanum lycopersicum
Solyc03g034130.2
I
0.605
Solyc07g062790.1
Solanum lycopersicum
Solyc07g062790.1
I
0.616
Solyc09g008810.2
Solanum lycopersicum
Solyc09g008810.2
I
0.768
TCM_018470
Theobroma cacao
TCM_018470
I
0.679
TCM_022391
Theobroma cacao
TCM_022391
I
0.765
TCM_031644
Theobroma cacao
TCM_031644
I
0.626
Thhalv10014157m.g
Eutrema salsugineum
Thhalv10014157m.g
I
0.679
Thhalv10014547m.g
Eutrema salsugineum
Thhalv10014547m.g
I
0.780
Thhalv10014905m.g
Eutrema salsugineum
Thhalv10014905m.g
I
0.652
Thhalv10015784m.g
Eutrema salsugineum
Thhalv10015784m.g
I
0.811
Thhalv10017567m.g
Eutrema salsugineum
Thhalv10017567m.g
I
0.736
Thhalv10021334m.g
Eutrema salsugineum
Thhalv10021334m.g
I
0.659
VIT_08s0007g04200
Vitis vinifera
VIT_08s0007g04200
I
0.764
VIT_10s0003g00380
Vitis vinifera
VIT_10s0003g00380
I
0.647
VIT_16s0098g01170
Vitis vinifera
VIT_16s0098g01170
I
0.652
VIT_18s0001g06430
Vitis vinifera
VIT_18s0001g06430
I
0.686
VIT_19s0014g02110
Vitis vinifera
VIT_19s0014g02110
I
0.670