CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10025876m.g
(
Capsella rubella
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Carubv10025876m.g
T228351_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATHB-9
M06898_2.00
Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH
Dap-seq
OMalley et al.(2016)
PHV_col_a
0.815
0.930
ATHB-9
M02682_2.00
Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND
SELEX
Mathelier et al.(2014)
MA0573.1
0.815
0.930
ATHB-9
M10623_2.00
Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND
Transfac
Matys et al.(2006)
P$ATHB9_01
0.815
0.930
ATHB-15
M00864_2.00
Arabidopsis thaliana
AATAATTACT
AGTAATTATT
PBM
Franco-Zorrilla et al.(2014)
ICU4
0.810
0.877
ATHB-15
M06899_2.00
Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH
Dap-seq
OMalley et al.(2016)
ATHB15_col_a
0.810
0.877
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10025876m
Homeodomain
23
83
SGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECSILANIEPKQIKVWFQNRRCRDKQ
Links
Other
Homeodomain
family TFs
Other
Capsella rubella
TFs
333 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy