Gorai.007G111400 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.007G111400 T228732_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.713 0.877
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.713 0.877
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.693 0.614
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.693 0.614
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.693 0.614
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.693 0.614
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.681 0.596
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.681 0.596
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.675 0.614
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.675 0.614
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.675 0.614
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.675 0.596
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.674 0.667
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.662 0.614
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.662 0.614
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.662 0.614
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.662 0.614
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.655 0.561
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.655 0.561
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.654 0.544
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.654 0.544
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.654 0.544
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.654 0.544
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G111400.1 Homeodomain 29 85

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

761 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
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ZNF205 Bos taurus ENSBTAG00000005572 I
ZNF205 Callithrix jacchus ENSCJAG00000015546 I
ZNF205 Canis familiaris ENSCAFG00000023869 I
ENSCSAG00000010150 Chlorocebus sabaeus ENSCSAG00000010150 I
ZNF205 Dasypus novemcinctus ENSDNOG00000037994 I
ENSETEG00000002476 Echinops telfairi ENSETEG00000002476 I
ZNF205 Equus caballus ENSECAG00000009869 I
ZNF205 Erinaceus europaeus ENSEEUG00000010049 I
ZNF205 Felis catus ENSFCAG00000026028 I
ZNF205 Gorilla gorilla ENSGGOG00000012036 I
ZNF205 Homo sapiens ENSG00000122386 D
ENSSTOG00000003803 Ictidomys tridecemlineatus ENSSTOG00000003803 I
ZNF205 Loxodonta africana ENSLAFG00000021564 I
ENSP00000219091 Macaca fascicularis ENSP00000219091 I
ZNF205 Macaca mulatta ENSMMUG00000009487 I
ENSMEUG00000004328 Macropus eugenii ENSMEUG00000004328 I
ZNF205 Microcebus murinus ENSMICG00000009089 I
ENSMPUG00000015184 Mustela putorius furo ENSMPUG00000015184 I
Zfp13 Mus musculus ENSMUSG00000062012 I
Myotis_brandtii_ZNF205_10028065 Myotis brandtii Myotis_brandtii_ZNF205_10028065 I
ENSNLEG00000009600 Nomascus leucogenys ENSNLEG00000009600 I
ZNF205 Ochotona princeps ENSOPRG00000005820 I
ZNF205 Otolemur garnettii ENSOGAG00000003693 I
ENSOARG00000001319 Ovis aries ENSOARG00000001319 I
ZNF205 Pan troglodytes ENSPTRG00000007686 I
ENSPANG00000024398 Papio anubis ENSPANG00000024398 I
ENSPPYG00000007034 Pongo abelii ENSPPYG00000007034 I
ZNF205 Pteropus vampyrus ENSPVAG00000001475 I
Zfp13 Rattus norvegicus ENSRNOG00000003455 I
ZNF205 Sorex araneus ENSSARG00000006551 I