CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.012G046200
(
Gossypium raimondii
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Gorai.012G046200
T228806_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZHD7
M02155_2.00
Oryza sativa
NNWAANNNNN
NNNNNTTWNN
PBM
Weirauch et al.(2014)
pTH6076
0.638
0.618
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.012G046200.1
Homeodomain
129
187
KRFRTKFSQAQKEKMLSFAEKAGWRIQKLDENAVQQFCQEIGIKRRVLKVWMHNNKQSF
Links
Other
Homeodomain
family TFs
Other
Gossypium raimondii
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10027184m.g
Citrus clementina
Ciclev10027184m.g
I
0.844
TCM_001660
Theobroma cacao
TCM_001660
I
0.828
MDP0000804580
Malus domestica
MDP0000804580
I
0.761
PRUPE_ppa020272mg
Prunus persica
PRUPE_ppa020272mg
I
0.750
Ca_02034
Cicer arietinum
Ca_02034
I
0.740
gene14755-v1.0-hybrid
Fragaria vesca
gene14755-v1.0-hybrid
I
0.739
GLYMA20G35690
Glycine max
GLYMA20G35690
I
0.734
Ca_12172
Cicer arietinum
Ca_12172
I
0.726
29983.m003297
Ricinus communis
29983.m003297
I
0.724
cassava39895.m1
Manihot esculenta
cassava39895.m1
I
0.712
POPTR_0004s14270
Populus trichocarpa
POPTR_0004s14270
I
0.697
SapurV1A.0185s0100
Salix purpurea
SapurV1A.0185s0100
I
0.697
mgf026503m
Mimulus guttatus
mgf026503m
I
0.695
Lus10015900.g
Linum usitatissimum
Lus10015900.g
I
0.691
mgf024641m
Mimulus guttatus
mgf024641m
I
0.678
SELMODRAFT_49899
Selaginella moellendorffii
SELMODRAFT_49899
I
0.667
SELMODRAFT_59936
Selaginella moellendorffii
SELMODRAFT_59936
I
0.667
Eucgr.I00022
Eucalyptus grandis
Eucgr.I00022
I
0.663
Si020227m.g
Setaria italica
Si020227m.g
I
0.660
GRMZM2G069365
Zea mays
GRMZM2G069365
I
0.659
Sb04g030480
Sorghum bicolor
Sb04g030480
I
0.659
Pavir.Aa00802
Panicum virgatum
Pavir.Aa00802
I
0.659
Carubv10028391m.g
Capsella rubella
Carubv10028391m.g
I
0.649
MLOC_18998
Hordeum vulgare
MLOC_18998
I
0.643
LPERR02G24020
Leersia perrieri
LPERR02G24020
I
0.638
OGLUM02G30190
Oryza glumaepatula
OGLUM02G30190
I
0.638
OMERI02G28440
Oryza meridionalis
OMERI02G28440
I
0.638
OPUNC02G27120
Oryza punctata
OPUNC02G27120
I
0.638
ZHD7
Oryza sativa
OS02G0706600
D
0.638
Q0DYA2_ORYSJ
Oryza sativa
Q0DYA2_ORYSJ
I
0.638
Pavir.Ab02855
Panicum virgatum
Pavir.Ab02855
I
0.637
Pavir.J22932
Panicum virgatum
Pavir.J22932
N
0.618
Traes_4AL_5659286D11
Triticum aestivum
Traes_4AL_5659286D11
N
0.617