CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10027175.g
(
Linum usitatissimum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Lus10027175.g
T228909_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATML1
M02048_2.00
Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN
PBM
Weirauch et al.(2014)
pTH8203
0.843
0.912
ATML1
M10626_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ML1_01
0.843
0.912
PDF2
M06921_2.00
Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW
Dap-seq
OMalley et al.(2016)
PDF2_col
0.831
0.895
PDF2
M10625_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PDF2_01
0.831
0.895
HDG1
M06917_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_col100_a
0.824
0.737
HDG1
M06918_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_colamp_a
0.824
0.737
PK24181.1
M01252_2.00
Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN
PBM
Lambert et al.(2019)
pTH11300
0.821
0.772
ANL2
M02046_2.00
Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN
PBM
Weirauch et al.(2014)
pTH8244
0.808
0.772
ANL2
M06919_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_col_a
0.808
0.772
ANL2
M06920_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_colamp_a
0.808
0.772
HDG11
M02039_2.00
Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH
PBM
Weirauch et al.(2014)
pTH7664
0.804
0.737
HDG11
M06904_2.00
Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH
Dap-seq
OMalley et al.(2016)
EDT1_col
0.804
0.737
HDG9
M10628_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG9_01
0.802
0.649
HDG7
M06931_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG7_col_a
0.766
0.702
HDG7
M10629_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG7_01
0.766
0.702
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10027175
Homeodomain
133
189
KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT
Links
Other
Homeodomain
family TFs
Other
Linum usitatissimum
TFs
619 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action