MDP0000204639 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000204639 T229011_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.639 0.789
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.639 0.789
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.639 0.789
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.635 0.737
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.635 0.737
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.621 0.789
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.621 0.789
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.603 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000204639 Homeodomain 120 176

Links

Other Homeodomain family TFs
Other Malus domestica TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014288 Ricinus communis 30147.m014288 I 0.670
orange1.1g003954m.g Citrus sinensis orange1.1g003954m.g I 0.670
TCM_015114 Theobroma cacao TCM_015114 I 0.668
cassava23105.valid.m1 Manihot esculenta cassava23105.valid.m1 I 0.666
AMTR_s00040p00231210 Amborella trichopoda AMTR_s00040p00231210 I 0.660
AMTR_s00069p00091460 Amborella trichopoda AMTR_s00069p00091460 I 0.660
BGIOSGA029405 Oryza indica BGIOSGA029405 I 0.660
BRADI4G35760 Brachypodium distachyon BRADI4G35760 I 0.660
GRMZM2G116658 Zea mays GRMZM2G116658 I 0.660
LPERR09G13080 Leersia perrieri LPERR09G13080 I 0.660
OBART09G17090 Oryza barthii OBART09G17090 I 0.660
OGLUM09G17630 Oryza glumaepatula OGLUM09G17630 I 0.660
OMERI09G12650 Oryza meridionalis OMERI09G12650 I 0.660
ONIVA09G18120 Oryza nivara ONIVA09G18120 I 0.660
OPUNC09G15430 Oryza punctata OPUNC09G15430 I 0.660
ORUFI09G18410 Oryza rufipogon ORUFI09G18410 I 0.660
Sb02g030470 Sorghum bicolor Sb02g030470 I 0.660
Si028908m.g Setaria italica Si028908m.g I 0.660
Traes_5BL_BCAA67AC6 Triticum aestivum Traes_5BL_BCAA67AC6 I 0.660
TRIUR3_30780 Triticum urartu TRIUR3_30780 I 0.660
Aquca_013_00387 Aquilegia coerulea Aquca_013_00387 I 0.660
Bostr.25993s0196 Boechera stricta Bostr.25993s0196 I 0.660
Cagra.0050s0122 Capsella grandiflora Cagra.0050s0122 I 0.660
Carubv10022677m.g Capsella rubella Carubv10022677m.g I 0.660
Pavir.Ba01266 Panicum virgatum Pavir.Ba01266 I 0.660
Pavir.J04827 Panicum virgatum Pavir.J04827 I 0.660
Thhalv10001317m.g Eutrema salsugineum Thhalv10001317m.g I 0.658
GLYMA09G26600 Glycine max GLYMA09G26600 I 0.649
GLYMA16G32130 Glycine max GLYMA16G32130 I 0.649
Ca_19784 Cicer arietinum Ca_19784 I 0.649
cassava21275.m1 Manihot esculenta cassava21275.m1 I 0.649
evm.TU.supercontig_107.25 Carica papaya evm.TU.supercontig_107.25 I 0.649
gene13306-v1.0-hybrid Fragaria vesca gene13306-v1.0-hybrid I 0.649
Gorai.004G120700 Gossypium raimondii Gorai.004G120700 I 0.649
PRUPE_ppa001894mg Prunus persica PRUPE_ppa001894mg I 0.648
Pm019365 Prunus mume Pm019365 I 0.648
PK00670.1 Cannabis sativa PK00670.1 I 0.648
AC235534.1_FG007 Zea mays AC235534.1_FG007 I 0.642
GLYMA20G29580 Glycine max GLYMA20G29580 I 0.641
GRMZM2G026643 Zea mays GRMZM2G026643 I 0.641
MTR_1g101280 Medicago truncatula MTR_1g101280 I 0.641
Sb03g008090 Sorghum bicolor Sb03g008090 I 0.641
Si000344m.g Setaria italica Si000344m.g I 0.641
Ca_04491 Cicer arietinum Ca_04491 I 0.641
Pavir.Eb00587 Panicum virgatum Pavir.Eb00587 I 0.641
ANL2 Arabidopsis thaliana AT4G00730 D 0.639
BGIOSGA005852 Oryza indica BGIOSGA005852 I 0.639
Bo3g054630 Brassica oleracea Bo3g054630 I 0.639
Bo4g024940 Brassica oleracea Bo4g024940 I 0.639
Bo9g002480 Brassica oleracea Bo9g002480 I 0.639
Bra004934 Brassica rapa Bra004934 I 0.639
Bra037355 Brassica rapa Bra037355 I 0.639
BRADI3G51540 Brachypodium distachyon BRADI3G51540 I 0.639
F775_14988 Aegilops tauschii F775_14988 I 0.639
GLYMA03G01860 Glycine max GLYMA03G01860 I 0.639
GLYMA07G08340 Glycine max GLYMA07G08340 I 0.639
GLYMA09G40130 Glycine max GLYMA09G40130 I 0.639
GLYMA10G38280 Glycine max GLYMA10G38280 I 0.639
GLYMA18G45970 Glycine max GLYMA18G45970 I 0.639
GSMUA_Achr1G18760_001 Musa acuminata GSMUA_Achr1G18760_001 I 0.639
GSMUA_Achr5G10510_001 Musa acuminata GSMUA_Achr5G10510_001 I 0.639
GSMUA_Achr5G20050_001 Musa acuminata GSMUA_Achr5G20050_001 I 0.639
LPERR02G22520 Leersia perrieri LPERR02G22520 I 0.639
MLOC_61420 Hordeum vulgare MLOC_61420 I 0.639
MTR_7g076080 Medicago truncatula MTR_7g076080 I 0.639
MTR_8g432540 Medicago truncatula MTR_8g432540 I 0.639
OB02G35000 Oryza brachyantha OB02G35000 I 0.639
OBART02G27630 Oryza barthii OBART02G27630 I 0.639
OGLUM02G28170 Oryza glumaepatula OGLUM02G28170 I 0.639
OLONG_000360 Oryza longistaminata OLONG_000360 I 0.639
OMERI02G26880 Oryza meridionalis OMERI02G26880 I 0.639
ONIVA02G30520 Oryza nivara ONIVA02G30520 I 0.639
OPUNC02G25360 Oryza punctata OPUNC02G25360 I 0.639
ORGLA02G0238300 Oryza glaberrima ORGLA02G0238300 I 0.639
ORUFI02G29080 Oryza rufipogon ORUFI02G29080 I 0.639
ROC5 Oryza sativa OS02G0674800 I 0.639
PGSC0003DMG400027770 Solanum tuberosum PGSC0003DMG400027770 I 0.639
POPTR_0002s15610 Populus trichocarpa POPTR_0002s15610 I 0.639
POPTR_0014s07130 Populus trichocarpa POPTR_0014s07130 I 0.639
PRUPE_ppa001436mg Prunus persica PRUPE_ppa001436mg I 0.639
Solyc01g091630.2 Solanum lycopersicum Solyc01g091630.2 I 0.639
TCM_005412 Theobroma cacao TCM_005412 I 0.639
VIT_15s0048g02000 Vitis vinifera VIT_15s0048g02000 I 0.639
Ca_06267 Cicer arietinum Ca_06267 I 0.639
Ca_16386 Cicer arietinum Ca_16386 I 0.639
Cla007037 Citrullus lanatus Cla007037 I 0.639
Pm017987 Prunus mume Pm017987 I 0.639
30174.m008969 Ricinus communis 30174.m008969 I 0.639
cassava25087.valid.m1 Manihot esculenta cassava25087.valid.m1 I 0.639
cassava36876.valid.m1 Manihot esculenta cassava36876.valid.m1 I 0.639
Cucsa.363170 Cucumis sativus Cucsa.363170 I 0.639
mgf010371m Mimulus guttatus mgf010371m I 0.639
mgf025522m Mimulus guttatus mgf025522m I 0.639
Bostr.10064s0036 Boechera stricta Bostr.10064s0036 I 0.639
Cagra.6594s0010 Capsella grandiflora Cagra.6594s0010 I 0.639
Carubv10000257m.g Capsella rubella Carubv10000257m.g I 0.639
Ciclev10018855m.g Citrus clementina Ciclev10018855m.g I 0.639
Eucgr.D02248 Eucalyptus grandis Eucgr.D02248 I 0.639
evm.TU.supercontig_18.215 Carica papaya evm.TU.supercontig_18.215 I 0.639
gene19130-v1.0-hybrid Fragaria vesca gene19130-v1.0-hybrid I 0.639
Gorai.001G171000 Gossypium raimondii Gorai.001G171000 I 0.639
Gorai.007G096000 Gossypium raimondii Gorai.007G096000 I 0.639
Gorai.008G117200 Gossypium raimondii Gorai.008G117200 I 0.639
Lus10036567.g Linum usitatissimum Lus10036567.g I 0.639
Lus10041362.g Linum usitatissimum Lus10041362.g I 0.639
MDP0000285637 Malus domestica MDP0000285637 I 0.639
MDP0000491277 Malus domestica MDP0000491277 I 0.639
orange1.1g002869m.g Citrus sinensis orange1.1g002869m.g I 0.639
SapurV1A.0024s0300 Salix purpurea SapurV1A.0024s0300 I 0.639
SapurV1A.0586s0110 Salix purpurea SapurV1A.0586s0110 I 0.639
Thhalv10028440m.g Eutrema salsugineum Thhalv10028440m.g I 0.639
PK08504.1 Cannabis sativa PK08504.1 I 0.639
LjSGA_016003.1 Lotus japonicus LjSGA_016003.1 I 0.639
MTR_0198s0030 Medicago truncatula MTR_0198s0030 I 0.638
OB09G23660 Oryza brachyantha OB09G23660 I 0.638
OS09G0526300 Oryza sativa OS09G0526300 I 0.638
PGSC0003DMG400014279 Solanum tuberosum PGSC0003DMG400014279 I 0.638
Solyc03g026070.2 Solanum lycopersicum Solyc03g026070.2 I 0.638
Eucgr.K00234 Eucalyptus grandis Eucgr.K00234 I 0.638
HDG1 Arabidopsis thaliana AT3G61150 D 0.635
HDG1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5002090 I 0.635
POPTR_0012s13390 Populus trichocarpa POPTR_0012s13390 I 0.635
POPTR_0015s13340 Populus trichocarpa POPTR_0015s13340 I 0.635
Cla021581 Citrullus lanatus Cla021581 I 0.635
Bostr.13158s0105 Boechera stricta Bostr.13158s0105 I 0.635
Cagra.3373s0039 Capsella grandiflora Cagra.3373s0039 I 0.635
Carubv10016704m.g Capsella rubella Carubv10016704m.g I 0.635
SapurV1A.0068s0140 Salix purpurea SapurV1A.0068s0140 I 0.635
Thhalv10005786m.g Eutrema salsugineum Thhalv10005786m.g I 0.635
GSMUA_AchrUn_randomG10540_001 Musa acuminata GSMUA_AchrUn_randomG10540_001 I 0.634
Bo6g077480 Brassica oleracea Bo6g077480 I 0.631
Bra003439 Brassica rapa Bra003439 I 0.631
MDP0000322550 Malus domestica MDP0000322550 I 0.627
HDG7 Arabidopsis thaliana AT5G52170 D 0.621
BGIOSGA014527 Oryza indica BGIOSGA014527 I 0.619
OBART04G22070 Oryza barthii OBART04G22070 I 0.619
OGLUM04G22100 Oryza glumaepatula OGLUM04G22100 I 0.619
OMERI04G18610 Oryza meridionalis OMERI04G18610 I 0.619
ONIVA04G20660 Oryza nivara ONIVA04G20660 I 0.619
OPUNC04G19830 Oryza punctata OPUNC04G19830 I 0.619
ORGLA04G0191300 Oryza glaberrima ORGLA04G0191300 I 0.619
ORUFI04G23720 Oryza rufipogon ORUFI04G23720 I 0.619
OS04G0569100 Oryza sativa OS04G0569100 I 0.619
Pavir.Ga00993 Panicum virgatum Pavir.Ga00993 I 0.619
Si009396m.g Setaria italica Si009396m.g I 0.618
Pavir.Gb01032 Panicum virgatum Pavir.Gb01032 I 0.618
OB04G29090 Oryza brachyantha OB04G29090 I 0.617
Thhalv10015677m.g Eutrema salsugineum Thhalv10015677m.g I 0.617
Lus10005759.g Linum usitatissimum Lus10005759.g I 0.616
Lus10027437.g Linum usitatissimum Lus10027437.g I 0.616
Lus10031321.g Linum usitatissimum Lus10031321.g I 0.612
Lus10031892.g Linum usitatissimum Lus10031892.g I 0.612
mgf015456m Mimulus guttatus mgf015456m I 0.609
LPERR04G18060 Leersia perrieri LPERR04G18060 I 0.608
PGSC0003DMG400007733 Solanum tuberosum PGSC0003DMG400007733 I 0.608
Cla006300 Citrullus lanatus Cla006300 I 0.608
Cucsa.250870 Cucumis sativus Cucsa.250870 I 0.608
PDK_20s1385771g001 Phoenix dactylifera PDK_20s1385771g001 I 0.608
BRADI3G57567 Brachypodium distachyon BRADI3G57567 I 0.607
F775_07138 Aegilops tauschii F775_07138 I 0.607
GRMZM2G126646 Zea mays GRMZM2G126646 I 0.607
GRMZM2G145690 Zea mays GRMZM2G145690 I 0.607
MLOC_15014 Hordeum vulgare MLOC_15014 I 0.607
Sb04g034580 Sorghum bicolor Sb04g034580 I 0.607
Si016483m.g Setaria italica Si016483m.g I 0.607
Traes_6DL_8D95F127B Triticum aestivum Traes_6DL_8D95F127B I 0.607
cassava6464.valid.m1 Manihot esculenta cassava6464.valid.m1 I 0.607
Eucgr.K00800 Eucalyptus grandis Eucgr.K00800 I 0.607
Gorai.005G150100 Gossypium raimondii Gorai.005G150100 I 0.607
Gorai.008G172800 Gossypium raimondii Gorai.008G172800 I 0.607
Gorai.013G100200 Gossypium raimondii Gorai.013G100200 I 0.607
Pavir.Aa00335 Panicum virgatum Pavir.Aa00335 I 0.607
Pavir.J34398 Panicum virgatum Pavir.J34398 I 0.607
TCM_011330 Theobroma cacao TCM_011330 I 0.606
BGIOSGA027698 Oryza indica BGIOSGA027698 I 0.605
GLYMA06G46000 Glycine max GLYMA06G46000 I 0.605
GLYMA12G10710 Glycine max GLYMA12G10710 I 0.605
GLYMA12G32050 Glycine max GLYMA12G32050 I 0.605
GLYMA13G38430 Glycine max GLYMA13G38430 I 0.605
GRMZM2G004957 Zea mays GRMZM2G004957 I 0.605
LPERR08G02370 Leersia perrieri LPERR08G02370 I 0.605
MTR_2g088470 Medicago truncatula MTR_2g088470 I 0.605
OB08G12470 Oryza brachyantha OB08G12470 I 0.605
OBART08G02270 Oryza barthii OBART08G02270 I 0.605
OGLUM08G02240 Oryza glumaepatula OGLUM08G02240 I 0.605
OLONG_001685 Oryza longistaminata OLONG_001685 I 0.605
OMERI08G02310 Oryza meridionalis OMERI08G02310 I 0.605
ONIVA08G02450 Oryza nivara ONIVA08G02450 I 0.605
OPUNC08G02090 Oryza punctata OPUNC08G02090 I 0.605
ORGLA08G0016400 Oryza glaberrima ORGLA08G0016400 I 0.605
ORUFI08G02510 Oryza rufipogon ORUFI08G02510 I 0.605
OS08G0136100 Oryza sativa OS08G0136100 I 0.605
POPTR_0002s23080 Populus trichocarpa POPTR_0002s23080 I 0.605
POPTR_0014s15010 Populus trichocarpa POPTR_0014s15010 I 0.605
PRUPE_ppa019198mg Prunus persica PRUPE_ppa019198mg I 0.605
Sb07g002780 Sorghum bicolor Sb07g002780 I 0.605
Si013279m.g Setaria italica Si013279m.g I 0.605
HDG2 Vitis vinifera VIT_12s0059g02310 I 0.605
Ca_07131 Cicer arietinum Ca_07131 I 0.605
Pm015192 Prunus mume Pm015192 I 0.605
29600.m000538 Ricinus communis 29600.m000538 I 0.605
cassava12566.valid.m1 Manihot esculenta cassava12566.valid.m1 I 0.605
Aquca_047_00083 Aquilegia coerulea Aquca_047_00083 I 0.605
Ciclev10014373m.g Citrus clementina Ciclev10014373m.g I 0.605
Eucgr.A01715 Eucalyptus grandis Eucgr.A01715 I 0.605
evm.TU.supercontig_8.223 Carica papaya evm.TU.supercontig_8.223 I 0.605
Lus10027175.g Linum usitatissimum Lus10027175.g I 0.605
Lus10039667.g Linum usitatissimum Lus10039667.g I 0.605
MDP0000318514 Malus domestica MDP0000318514 I 0.605
MDP0000389745 Malus domestica MDP0000389745 I 0.605
orange1.1g004294m.g Citrus sinensis orange1.1g004294m.g I 0.605
Pavir.Fb00210 Panicum virgatum Pavir.Fb00210 I 0.605
Pavir.J39995 Panicum virgatum Pavir.J39995 I 0.605
SapurV1A.0402s0050 Salix purpurea SapurV1A.0402s0050 I 0.605
SapurV1A.1440s0010 Salix purpurea SapurV1A.1440s0010 I 0.605
PK16243.1 Cannabis sativa PK16243.1 I 0.605
LjSGA_004176.2 Lotus japonicus LjSGA_004176.2 I 0.605
LjSGA_029418.1 Lotus japonicus LjSGA_029418.1 I 0.605
Cla007796 Citrullus lanatus Cla007796 I 0.604
Cucsa.148430 Cucumis sativus Cucsa.148430 I 0.604
GLYMA09G29810 Glycine max GLYMA09G29810 I 0.603
GLYMA16G34350 Glycine max GLYMA16G34350 I 0.603
GSMUA_Achr10G25900_001 Musa acuminata GSMUA_Achr10G25900_001 I 0.603
GSMUA_Achr5G14100_001 Musa acuminata GSMUA_Achr5G14100_001 I 0.603
GSMUA_Achr7G11310_001 Musa acuminata GSMUA_Achr7G11310_001 I 0.603
POPTR_0015s05050 Populus trichocarpa POPTR_0015s05050 I 0.603
PRUPE_ppa015345m2g Prunus persica PRUPE_ppa015345m2g I 0.603
TCM_044944 Theobroma cacao TCM_044944 I 0.603
Cla018935 Citrullus lanatus Cla018935 I 0.603
Pm025254 Prunus mume Pm025254 I 0.603
Cucsa.112320 Cucumis sativus Cucsa.112320 I 0.603
mgf001299m Mimulus guttatus mgf001299m I 0.603
Aquca_091_00087 Aquilegia coerulea Aquca_091_00087 I 0.603
Eucgr.H00609 Eucalyptus grandis Eucgr.H00609 I 0.603
Gorai.008G293300 Gossypium raimondii Gorai.008G293300 I 0.603
SapurV1A.0649s0040 Salix purpurea SapurV1A.0649s0040 I 0.603
PK24181.1 Cannabis sativa PK24181.1 D 0.603
AMTR_s00024p00094630 Amborella trichopoda AMTR_s00024p00094630 I 0.602
MTR_6g477820 Medicago truncatula MTR_6g477820 I 0.602
Solyc03g098200.2 Solanum lycopersicum Solyc03g098200.2 I 0.602
VIT_17s0053g00780 Vitis vinifera VIT_17s0053g00780 I 0.602
Ca_18028 Cicer arietinum Ca_18028 I 0.602
GSMUA_Achr6G05990_001 Musa acuminata GSMUA_Achr6G05990_001 I 0.601
GLYMA01G45070 Glycine max GLYMA01G45070 I 0.600
GLYMA11G00570 Glycine max GLYMA11G00570 I 0.600
Ciclev10019153m.g Citrus clementina Ciclev10019153m.g I 0.599
evm.TU.supercontig_7.137 Carica papaya evm.TU.supercontig_7.137 I 0.599
gene09297-v1.0-hybrid Fragaria vesca gene09297-v1.0-hybrid I 0.599
LjSGA_091885.1 Lotus japonicus LjSGA_091885.1 I 0.599