CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ba00249
(
Panicum virgatum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Pavir.Ba00249
T229211_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WOX11
M06916_2.00
Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT
Dap-seq
OMalley et al.(2016)
WOX11_col_a
0.841
0.930
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ba00249.1.p
Homeodomain
17
78
VRSRWTPKPEQILILESIFNSGMVNPPKNETVRIRKLLERFGAVGDANVFYWFQNRRSRSRR
Links
Other
Homeodomain
family TFs
Other
Panicum virgatum
TFs
216 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29900.m001555
Ricinus communis
29900.m001555
I
0.726
30072.m000927
Ricinus communis
30072.m000927
I
0.865
AMTR_s00021p00189010
Amborella trichopoda
AMTR_s00021p00189010
I
0.726
AMTR_s00119p00100440
Amborella trichopoda
AMTR_s00119p00100440
I
0.867
Aquca_014_00949
Aquilegia coerulea
Aquca_014_00949
I
0.865
Aquca_036_00007
Aquilegia coerulea
Aquca_036_00007
I
0.726
BGIOSGA001059
Oryza indica
BGIOSGA001059
I
0.726
BGIOSGA020366
Oryza indica
BGIOSGA020366
I
0.710
BGIOSGA026413
Oryza indica
BGIOSGA026413
I
0.867
Bo11772s010
Brassica oleracea
Bo11772s010
I
0.810
Bo1g153650
Brassica oleracea
Bo1g153650
I
0.842
Bo2g013980
Brassica oleracea
Bo2g013980
I
0.810
Bo2g062660
Brassica oleracea
Bo2g062660
I
0.810
Bo2g127670
Brassica oleracea
Bo2g127670
I
0.690
Bo3g027500
Brassica oleracea
Bo3g027500
I
0.726
Bo4g041330
Brassica oleracea
Bo4g041330
I
0.726
Bo5g148780
Brassica oleracea
Bo5g148780
I
0.840
Bo8g106350
Brassica oleracea
Bo8g106350
I
0.601
Bo9g070070
Brassica oleracea
Bo9g070070
I
0.642
Bo9g159820
Brassica oleracea
Bo9g159820
I
0.833
Bostr.19046s0084
Boechera stricta
Bostr.19046s0084
I
0.842
Bostr.23794s0703
Boechera stricta
Bostr.23794s0703
I
0.726
Bostr.8819s0128
Boechera stricta
Bostr.8819s0128
I
0.690
Bra002108
Brassica rapa
Bra002108
I
0.833
Bra005464
Brassica rapa
Bra005464
I
0.726
Bra017448
Brassica rapa
Bra017448
I
0.642
Bra022008
Brassica rapa
Bra022008
I
0.690
Bra022960
Brassica rapa
Bra022960
I
0.726
Bra023638
Brassica rapa
Bra023638
I
0.810
Bra026791
Brassica rapa
Bra026791
I
0.601
Bra031980
Brassica rapa
Bra031980
I
0.840
Bra036446
Brassica rapa
Bra036446
I
0.842
BRADI1G17420
Brachypodium distachyon
BRADI1G17420
I
0.865
BRADI3G18800
Brachypodium distachyon
BRADI3G18800
I
0.822
Cagra.1195s0012
Capsella grandiflora
Cagra.1195s0012
I
0.726
Cagra.2097s0014
Capsella grandiflora
Cagra.2097s0014
I
0.690
Cagra.2098s0022
Capsella grandiflora
Cagra.2098s0022
I
0.842
Cagra.6254s0027
Capsella grandiflora
Cagra.6254s0027
I
0.840
Carubv10003719m.g
Capsella rubella
Carubv10003719m.g
I
0.840
Carubv10016081m.g
Capsella rubella
Carubv10016081m.g
I
0.842
Carubv10025224m.g
Capsella rubella
Carubv10025224m.g
I
0.726
Carubv10027735m.g
Capsella rubella
Carubv10027735m.g
I
0.690
cassava15562.m1
Manihot esculenta
cassava15562.m1
I
0.865
cassava40675.m1
Manihot esculenta
cassava40675.m1
I
0.726
cassava4506.m1
Manihot esculenta
cassava4506.m1
I
0.726
cassava4770.m1
Manihot esculenta
cassava4770.m1
I
0.812
Ca_00357
Cicer arietinum
Ca_00357
I
0.726
Ca_06365
Cicer arietinum
Ca_06365
I
0.726
Ca_08180
Cicer arietinum
Ca_08180
I
0.865
Ca_19701
Cicer arietinum
Ca_19701
I
0.865
Ciclev10015562m.g
Citrus clementina
Ciclev10015562m.g
I
0.726
Ciclev10021682m.g
Citrus clementina
Ciclev10021682m.g
I
0.865
Cla009819
Citrullus lanatus
Cla009819
I
0.726
CM1489.70.nc
Lotus japonicus
CM1489.70.nc
I
0.726
Cucsa.046640
Cucumis sativus
Cucsa.046640
I
0.726
Cucsa.336980
Cucumis sativus
Cucsa.336980
I
0.865
Eucgr.A02149
Eucalyptus grandis
Eucgr.A02149
I
0.867
Eucgr.D00577
Eucalyptus grandis
Eucgr.D00577
I
0.726
evm.TU.supercontig_7.12
Carica papaya
evm.TU.supercontig_7.12
I
0.726
evm.TU.supercontig_73.3
Carica papaya
evm.TU.supercontig_73.3
I
0.867
F775_11947
Aegilops tauschii
F775_11947
I
0.822
F775_22811
Aegilops tauschii
F775_22811
I
0.867
F775_23099
Aegilops tauschii
F775_23099
I
0.710
gene28935-v1.0-hybrid
Fragaria vesca
gene28935-v1.0-hybrid
I
0.725
gene29786-v1.0-hybrid
Fragaria vesca
gene29786-v1.0-hybrid
I
0.726
gene30337-v1.0-hybrid
Fragaria vesca
gene30337-v1.0-hybrid
I
0.852
GLYMA03G01000
Glycine max
GLYMA03G01000
I
0.867
GLYMA07G32430
Glycine max
GLYMA07G32430
I
0.726
GLYMA10G08030
Glycine max
GLYMA10G08030
I
0.726
GLYMA13G21860
Glycine max
GLYMA13G21860
I
0.726
GLYMA13G24150
Glycine max
GLYMA13G24150
I
0.726
GLYMA19G29660
Glycine max
GLYMA19G29660
I
0.867
Gorai.007G346300
Gossypium raimondii
Gorai.007G346300
I
0.865
Gorai.009G165700
Gossypium raimondii
Gorai.009G165700
I
0.726
Gorai.011G031300
Gossypium raimondii
Gorai.011G031300
I
0.726
Gorai.013G196400
Gossypium raimondii
Gorai.013G196400
I
0.865
GRMZM2G031882
Zea mays
GRMZM2G031882
I
0.726
GRMZM2G133972
Zea mays
GRMZM2G133972
I
0.726
GRMZM2G162481
Zea mays
GRMZM2G162481
I
0.867
GRMZM2G170958
Zea mays
GRMZM2G170958
I
0.822
GRMZM2G314064
Zea mays
GRMZM2G314064
I
0.835
GRMZM2G409881
Zea mays
GRMZM2G409881
I
0.743
GSMUA_Achr10G05090_001
Musa acuminata
GSMUA_Achr10G05090_001
I
0.821
GSMUA_Achr10G12820_001
Musa acuminata
GSMUA_Achr10G12820_001
I
0.865
GSMUA_Achr3G09460_001
Musa acuminata
GSMUA_Achr3G09460_001
I
0.822
GSMUA_Achr5G27730_001
Musa acuminata
GSMUA_Achr5G27730_001
I
0.825
GSMUA_Achr6G15910_001
Musa acuminata
GSMUA_Achr6G15910_001
I
0.865
GSMUA_Achr8G01590_001
Musa acuminata
GSMUA_Achr8G01590_001
I
0.856
GSMUA_Achr8G27170_001
Musa acuminata
GSMUA_Achr8G27170_001
I
0.726
GSMUA_Achr9G05010_001
Musa acuminata
GSMUA_Achr9G05010_001
I
0.845
GSMUA_Achr9G06660_001
Musa acuminata
GSMUA_Achr9G06660_001
I
0.726
LjSGA_037808.1
Lotus japonicus
LjSGA_037808.1
I
0.865
LjT26C04.20.nd
Lotus japonicus
LjT26C04.20.nd
I
0.865
LPERR01G22080
Leersia perrieri
LPERR01G22080
I
0.726
LPERR03G13850
Leersia perrieri
LPERR03G13850
I
0.867
LPERR07G23470
Leersia perrieri
LPERR07G23470
I
0.867
LPERR07G23520
Leersia perrieri
LPERR07G23520
I
0.834
Lus10005282.g
Linum usitatissimum
Lus10005282.g
I
0.726
MDP0000136426
Malus domestica
MDP0000136426
I
0.852
MDP0000232004
Malus domestica
MDP0000232004
I
0.726
MDP0000524885
Malus domestica
MDP0000524885
I
0.852
MDP0000729328
Malus domestica
MDP0000729328
I
0.726
mgf001579m
Mimulus guttatus
mgf001579m
I
0.726
mgf016673m
Mimulus guttatus
mgf016673m
I
0.865
mgf017527m
Mimulus guttatus
mgf017527m
I
0.806
MLOC_65745
Hordeum vulgare
MLOC_65745
I
0.867
MLOC_6669
Hordeum vulgare
MLOC_6669
I
0.822
MLOC_7925
Hordeum vulgare
MLOC_7925
I
0.722
MTR_2g015000
Medicago truncatula
MTR_2g015000
I
0.726
MTR_4g088070
Medicago truncatula
MTR_4g088070
I
0.653
MTR_4g088080
Medicago truncatula
MTR_4g088080
I
0.670
MTR_6g027390
Medicago truncatula
MTR_6g027390
I
0.867
MTR_7g025010
Medicago truncatula
MTR_7g025010
I
0.726
MTR_7g086940
Medicago truncatula
MTR_7g086940
I
0.865
OB01G35000
Oryza brachyantha
OB01G35000
I
0.726
OB08G17020
Oryza brachyantha
OB08G17020
I
0.800
OB10G14840
Oryza brachyantha
OB10G14840
I
0.771
OBART01G25820
Oryza barthii
OBART01G25820
I
0.726
OBART03G15820
Oryza barthii
OBART03G15820
I
0.867
OBART05G25900
Oryza barthii
OBART05G25900
I
0.710
OBART07G26670
Oryza barthii
OBART07G26670
I
0.867
OGLUM01G29670
Oryza glumaepatula
OGLUM01G29670
I
0.726
OGLUM03G15990
Oryza glumaepatula
OGLUM03G15990
I
0.867
OGLUM05G27500
Oryza glumaepatula
OGLUM05G27500
I
0.710
OGLUM07G26700
Oryza glumaepatula
OGLUM07G26700
I
0.867
OGLUM08G08120
Oryza glumaepatula
OGLUM08G08120
I
0.822
OMERI01G23480
Oryza meridionalis
OMERI01G23480
I
0.726
OMERI07G23310
Oryza meridionalis
OMERI07G23310
I
0.867
ONIVA01G29060
Oryza nivara
ONIVA01G29060
I
0.726
ONIVA05G27800
Oryza nivara
ONIVA05G27800
I
0.710
ONIVA07G26430
Oryza nivara
ONIVA07G26430
I
0.867
ONIVA08G08030
Oryza nivara
ONIVA08G08030
I
0.822
OPUNC03G15320
Oryza punctata
OPUNC03G15320
I
0.867
OPUNC05G23480
Oryza punctata
OPUNC05G23480
I
0.710
OPUNC07G25100
Oryza punctata
OPUNC07G25100
I
0.867
orange1.1g036145m.g
Citrus sinensis
orange1.1g036145m.g
I
0.726
orange1.1g047211m.g
Citrus sinensis
orange1.1g047211m.g
I
0.865
ORGLA01G0211300
Oryza glaberrima
ORGLA01G0211300
I
0.726
ORGLA03G0151500
Oryza glaberrima
ORGLA03G0151500
I
0.867
ORGLA05G0223800
Oryza glaberrima
ORGLA05G0223800
I
0.710
ORGLA07G0211000
Oryza glaberrima
ORGLA07G0211000
I
0.867
ORGLA08G0063600
Oryza glaberrima
ORGLA08G0063600
I
0.822
ORUFI03G16410
Oryza rufipogon
ORUFI03G16410
I
0.867
ORUFI05G27780
Oryza rufipogon
ORUFI05G27780
I
0.710
ORUFI07G27650
Oryza rufipogon
ORUFI07G27650
I
0.867
ORUFI08G08400
Oryza rufipogon
ORUFI08G08400
I
0.822
OS01G0667450
Oryza sativa
OS01G0667450
I
0.726
OS03G0325600
Oryza sativa
OS03G0325600
I
0.867
OS05G0564500
Oryza sativa
OS05G0564500
I
0.710
Pavir.Ca00938
Panicum virgatum
Pavir.Ca00938
I
0.743
Pavir.Eb02702
Panicum virgatum
Pavir.Eb02702
I
0.726
Pavir.Fb01029
Panicum virgatum
Pavir.Fb01029
I
0.822
Pavir.Ia03448
Panicum virgatum
Pavir.Ia03448
I
0.867
Pavir.Ib01521
Panicum virgatum
Pavir.Ib01521
I
0.783
Pavir.J23422
Panicum virgatum
Pavir.J23422
I
0.867
Pavir.J33010
Panicum virgatum
Pavir.J33010
I
0.814
PDK_20s13009443g001
Phoenix dactylifera
PDK_20s13009443g001
I
0.740
PDK_20s1465351g003
Phoenix dactylifera
PDK_20s1465351g003
I
0.621
PGSC0003DMG400010725
Solanum tuberosum
PGSC0003DMG400010725
I
0.726
PGSC0003DMG400027030
Solanum tuberosum
PGSC0003DMG400027030
I
0.840
Pm010370
Prunus mume
Pm010370
I
0.726
Pm025458
Prunus mume
Pm025458
I
0.831
POPTR_0004s05090
Populus trichocarpa
POPTR_0004s05090
I
0.726
POPTR_0011s05980
Populus trichocarpa
POPTR_0011s05980
I
0.726
POPTR_0013s06310
Populus trichocarpa
POPTR_0013s06310
I
0.865
POPTR_0019s05730
Populus trichocarpa
POPTR_0019s05730
I
0.865
PRUPE_ppa019841mg
Prunus persica
PRUPE_ppa019841mg
I
0.726
PRUPE_ppa026303mg
Prunus persica
PRUPE_ppa026303mg
I
0.852
SapurV1A.0012s0880
Salix purpurea
SapurV1A.0012s0880
I
0.726
SapurV1A.0270s0270
Salix purpurea
SapurV1A.0270s0270
I
0.726
SapurV1A.0631s0110
Salix purpurea
SapurV1A.0631s0110
I
0.865
SapurV1A.1660s0010
Salix purpurea
SapurV1A.1660s0010
I
0.865
Sb01g036670
Sorghum bicolor
Sb01g036670
I
0.867
Sb02g043300
Sorghum bicolor
Sb02g043300
I
0.867
Sb07g007600
Sorghum bicolor
Sb07g007600
I
0.822
Sb09g028562
Sorghum bicolor
Sb09g028562
I
0.743
SELMODRAFT_115439
Selaginella moellendorffii
SELMODRAFT_115439
I
0.651
SELMODRAFT_123325
Selaginella moellendorffii
SELMODRAFT_123325
I
0.651
SELMODRAFT_417553
Selaginella moellendorffii
SELMODRAFT_417553
I
0.600
SELMODRAFT_419270
Selaginella moellendorffii
SELMODRAFT_419270
I
0.600
Si004249m.g
Setaria italica
Si004249m.g
I
0.722
Si015065m.g
Setaria italica
Si015065m.g
I
0.822
Si025013m.g
Setaria italica
Si025013m.g
I
0.743
Si030836m.g
Setaria italica
Si030836m.g
I
0.867
Si039112m.g
Setaria italica
Si039112m.g
I
0.867
Solyc02g077390.1
Solanum lycopersicum
Solyc02g077390.1
I
0.726
Solyc06g072890.1
Solanum lycopersicum
Solyc06g072890.1
I
0.840
TCM_025805
Theobroma cacao
TCM_025805
I
0.865
TCM_029776
Theobroma cacao
TCM_029776
I
0.726
Thhalv10001099m.g
Eutrema salsugineum
Thhalv10001099m.g
I
0.670
Thhalv10009654m.g
Eutrema salsugineum
Thhalv10009654m.g
I
0.601
Thhalv10015651m.g
Eutrema salsugineum
Thhalv10015651m.g
I
0.842
Thhalv10016784m.g
Eutrema salsugineum
Thhalv10016784m.g
I
0.726
Thhalv10022222m.g
Eutrema salsugineum
Thhalv10022222m.g
I
0.842
TRAES3BF022100010CFD_g
Triticum aestivum
TRAES3BF022100010CFD_g
I
0.722
TRAES3BF079200050CFD_g
Triticum aestivum
TRAES3BF079200050CFD_g
I
0.822
Traes_2BS_8A1FE01EE
Triticum aestivum
Traes_2BS_8A1FE01EE
I
0.867
Traes_2DS_B5227B5F6
Triticum aestivum
Traes_2DS_B5227B5F6
I
0.867
Traes_4AS_EC04D9E8A
Triticum aestivum
Traes_4AS_EC04D9E8A
I
0.867
Traes_4DL_5E79CC79C
Triticum aestivum
Traes_4DL_5E79CC79C
I
0.867
TRIUR3_34808
Triticum urartu
TRIUR3_34808
I
0.846
TRIUR3_34876
Triticum urartu
TRIUR3_34876
I
0.822
VIT_08s0056g01200
Vitis vinifera
VIT_08s0056g01200
I
0.863
VIT_10s0003g00560
Vitis vinifera
VIT_10s0003g00560
I
0.726
WOX10
Oryza indica
BGIOSGA027391
I
0.822
WOX10
Oryza sativa
OS08G0242400
I
0.822
WOX11
Arabidopsis thaliana
AT3G03660
D
0.841
WOX11
Arabidopsis lyrata
fgenesh2_kg.3__312__AT3G03660.1
I
0.841
WOX11
Oryza sativa
OS07G0684900
I
0.867
WOX12
Arabidopsis lyrata
Al_scaffold_0006_1694
I
0.833
WOX12
Arabidopsis thaliana
AT5G17810
I
0.833
WOX6
Oryza indica
BGIOSGA010824
I
0.867
WOX8
Arabidopsis thaliana
AT5G45980
I
0.685
WOX8
Arabidopsis lyrata
scaffold_800245.1
I
0.690
WOX9
Arabidopsis lyrata
Al_scaffold_0004_1872
I
0.726
WOX9
Arabidopsis thaliana
AT2G33880
I
0.726