CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ib04234
(
Panicum virgatum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Pavir.Ib04234
T229317_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN
NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.844
0.750
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.821
0.661
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.821
0.661
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT
AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.807
0.732
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN
NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.807
0.714
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.807
0.714
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.807
0.714
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.807
0.714
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.807
0.714
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.807
0.714
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.807
0.714
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.789
0.714
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN
NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.789
0.714
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.789
0.714
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG
CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.789
0.714
ATHB-53
M06934_2.00
Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD
Dap-seq
OMalley et al.(2016)
ATHB53_col_a
0.752
0.589
ATHB-53
M06935_2.00
Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a
0.752
0.589
ATHB-21
M06907_2.00
Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB21_col_a
0.750
0.661
ATHB-21
M06908_2.00
Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW
Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a
0.750
0.661
HB-5
M06924_2.00
Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN
Dap-seq
OMalley et al.(2016)
ATHB40_col_a
0.747
0.607
HB-5
M06925_2.00
Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD
Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a
0.747
0.607
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.682
0.679
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.682
0.679
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.662
0.661
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.662
0.661
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ib04234.1.p
Homeodomain
69
124
EKKRRLAADQVRALERSFEVDNKLDPERKARIAHDLSLHPRQVAVWFQNRRARWKT
Links
Other
Homeodomain
family TFs
Other
Panicum virgatum
TFs
801 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy