CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HmN_000400200
(
Hymenolepis microstoma
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
HmN_000400200
T234305_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
hox12
M02075_2.00
Ciona intestinalis
TTWAYKAY
RTMRTWAA
PBM
Weirauch et al.(2014)
pTH6299
0.605
0.404
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HmN_000400200
Homeodomain
114
170
RRKRRPFSAEQIEILEAKFQEKRHLGCKEREELGAQTGLDESQVKVWFQNRRTKERK
Links
Other
Homeodomain
family TFs
Other
Hymenolepis microstoma
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSCING00000011300
Ciona intestinalis
ENSCING00000011300
N
0.720
ENSCSAVG00000005769
Ciona savignyi
ENSCSAVG00000005769
N
0.720
gw.38.210.1
Branchiostoma floridae
gw.38.210.1
I
0.696
SNAPOd2T00025381001
Oikopleura dioica
SNAPOd2T00025381001
I
0.678
SPU_000388
Strongylocentrotus purpuratus
SPU_000388
I
0.672
Sakowv30000860m.g
Saccoglossus kowalevskii
Sakowv30000860m.g
I
0.672
SPU_002631
Strongylocentrotus purpuratus
SPU_002631
I
0.671
Sakowv30025348m.g
Saccoglossus kowalevskii
Sakowv30025348m.g
I
0.657
CGI_10027385
Crassostrea gigas
CGI_10027385
N
0.655
LotgiG100031
Lottia gigantea
LotgiG100031
N
0.655
Ocbimv22015181m.g
Octopus bimaculoides
Ocbimv22015181m.g
N
0.655
SNAPOd2T00003836001
Oikopleura dioica
SNAPOd2T00003836001
I
0.640
csin103306
Clonorchis sinensis
csin103306
I
0.636
T265_10106
Opisthorchis viverrini
T265_10106
I
0.636
VSX2
Sus scrofa
ENSSSCG00000002363
I
0.634
e_gw.260.36.1
Branchiostoma floridae
e_gw.260.36.1
I
0.618
e_gw.260.37.1
Branchiostoma floridae
e_gw.260.37.1
I
0.618
SMU15029209
Schmidtea mediterranea
SMU15029209
I
0.614
nkx6.1
Takifugu rubripes
ENSTRUG00000018648
I
0.609
hox12
Ciona intestinalis
ENSCING00000007040
D
0.605
ENSCSAVG00000008685
Ciona savignyi
ENSCSAVG00000008685
I
0.605
ENSPMAG00000010089
Petromyzon marinus
ENSPMAG00000010089
I
0.605