CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Al_scaffold_0003_3814
(
Arabidopsis lyrata
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
Al_scaffold_0003_3814
T239661_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFY2
M03326_2.00
Homo sapiens
WTCGAWNVRWTCGAW
WTCGAWYBNWTCGAW
SELEX
Jolma et al.(2013)
HSFY2_1
0.331
0.303
HSFY2
M03327_2.00
Homo sapiens
CRTTCGAWW
WWTCGAAYG
SELEX
Jolma et al.(2013)
HSFY2_2
0.331
0.303
HSFY2
M03328_2.00
Homo sapiens
DTCGAAHSNWTCGAW
WTCGAWNSDTTCGAH
SELEX
Jolma et al.(2013)
HSFY2_3
0.331
0.303
HSFY1
M05515_2.00
Homo sapiens
NDTVGAAYGWTTCGAAYGB
VCRTTCGAAWCRTTCBAHN
SELEX
Yin et al.(2017)
HSFY1_eDBD_HT-SELEX_1
0.331
0.303
HSFY1
M05516_2.00
Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH
SELEX
Yin et al.(2017)
HSFY1_eDBD_HT-SELEX_2
0.331
0.303
HSFY2
M05511_2.00
Homo sapiens
NDTVGAAYGWTTCGAAYGB
VCRTTCGAAWCRTTCBAHN
SELEX
Yin et al.(2017)
HSFY2_eDBD_HT-SELEX_1
0.331
0.303
HSFY2
M05512_2.00
Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH
SELEX
Yin et al.(2017)
HSFY2_eDBD_HT-SELEX_2
0.331
0.303
HSFY1
M05517_2.00
Homo sapiens
NDTRGAATGTTTRGAATGB
VCATTCYAAACATTCYAHN
SELEX
Yin et al.(2017)
HSFY1_eDBD_Methyl-HT-SELEX_1
0.331
0.303
HSFY1
M05518_2.00
Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH
SELEX
Yin et al.(2017)
HSFY1_eDBD_Methyl-HT-SELEX_2
0.331
0.303
HSFY2
M05513_2.00
Homo sapiens
NDWRGAAYGTTTRGAAYGB
VCRTTCYAAACRTTCYWHN
SELEX
Yin et al.(2017)
HSFY2_eDBD_Methyl-HT-SELEX_1
0.331
0.303
HSFY2
M05514_2.00
Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH
SELEX
Yin et al.(2017)
HSFY2_eDBD_Methyl-HT-SELEX_2
0.331
0.303
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Al_scaffold_0003_3814
HSF
17
110
FYERLYKLVDDPSSDSIISWSKKSKSFVIRNQKKFIRRKIHSRFPFSSTFEKFISMLKYYGFSEMKRSDGLLEFGNENFVRGQPMLMKEMHLKA
Links
Other
HSF
family TFs
Other
Arabidopsis lyrata
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10012073m.g
Eutrema salsugineum
Thhalv10012073m.g
I
0.503
Carubv10014950m.g
Capsella rubella
Carubv10014950m.g
N
0.385
Cagra.3262s0013
Capsella grandiflora
Cagra.3262s0013
I
0.370
Cagra.2516s0029
Capsella grandiflora
Cagra.2516s0029
N
0.368
Cagra.3262s0012
Capsella grandiflora
Cagra.3262s0012
I
0.368
Carubv10006026m.g
Capsella rubella
Carubv10006026m.g
I
0.367
AT4G19630
Arabidopsis thaliana
AT4G19630
N
0.365
Cagra.3262s0011
Capsella grandiflora
Cagra.3262s0011
I
0.365
Carubv10006025m.g
Capsella rubella
Carubv10006025m.g
I
0.365
Cagra.3262s0014
Capsella grandiflora
Cagra.3262s0014
I
0.362
scaffold_702441.1
Arabidopsis lyrata
scaffold_702441.1
I
0.358
scaffold_702446.1
Arabidopsis lyrata
scaffold_702446.1
N
0.349
Bostr.26959s0010
Boechera stricta
Bostr.26959s0010
I
0.345
Bostr.30275s0431
Boechera stricta
Bostr.30275s0431
I
0.342
Bostr.27895s0020
Boechera stricta
Bostr.27895s0020
N
0.338
Thhalv10003411m.g
Eutrema salsugineum
Thhalv10003411m.g
I
0.334
HSFY2
Homo sapiens
ENSG00000169953
D
0.331
HSFY1
Homo sapiens
ENSG00000172468
D
0.331
e_gw.355.83.1
Branchiostoma floridae
e_gw.355.83.1
N
0.329
e_gw.355.85.1
Branchiostoma floridae
e_gw.355.85.1
N
0.329
estExt_fgenesh1_pg.C_30124
Sporobolomyces roseus
estExt_fgenesh1_pg.C_30124
I
0.329
Hsfy2
Mus musculus
ENSMUSG00000045336
I
0.326
Hsfy2
Rattus norvegicus
ENSRNOG00000038569
I
0.326
Bra025611
Brassica rapa
Bra025611
N
0.323
ENSMODG00000027398
Monodelphis domestica
ENSMODG00000027398
I
0.322
Bo4g139270
Brassica oleracea
Bo4g139270
N
0.320
SCLCIDRAFT_1218516
Scleroderma citrinum
SCLCIDRAFT_1218516
I
0.320
SMAR015422
Strigamia maritima
SMAR015422
N
0.318