CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo3g081420 *(Brassica oleracea)* HSF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00447 (HSF_DNA-bind)	IPR000232	Bo3g081420	T239788_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HSFA6B M06941_2.00	Arabidopsis thaliana	RGAASNTTCTAGA	TCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA6B_colamp_a	0.566	0.897
HSFA6B M06942_2.00	Arabidopsis thaliana	RGAABNTTCTRGAAN	NTTCYAGAANVTTCY	Dap-seq OMalley et al.(2016) HSFA6B_col	0.566	0.897
HSFA6A M06950_2.00	Arabidopsis thaliana	GAASNTTCTAGAANNW	WNNTTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_col_a	0.469	0.690
HSFA6A M06951_2.00	Arabidopsis thaliana	GAASNTTCTAGAA	TTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_colamp_a	0.469	0.690
HSFA1B M06948_2.00	Arabidopsis thaliana	GAANNTTCTAGA	TCTAGAANNTTC	Dap-seq OMalley et al.(2016) HSF3_col_a	0.466	0.759
HSFA1B M06949_2.00	Arabidopsis thaliana	TTCYRG	CYRGAA	Dap-seq OMalley et al.(2016) HSF3_colamp_a	0.466	0.759
HSFA4A M06947_2.00	Arabidopsis thaliana	NNNRGAABBTTCTAGAANN	NNTTCTAGAAVVTTCYNNN	Dap-seq OMalley et al.(2016) HSF21_col_a	0.444	0.690
HSFA1E M06939_2.00	Arabidopsis thaliana	RGAANNTTCTAGA	TCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSFA1E_col_a	0.441	0.736
HSFA1E M06940_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA1E_colamp_a	0.441	0.736
HSFB4 M06936_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFB4_col_a	0.414	0.701
HSFB2A M00869_2.00	Arabidopsis thaliana	NNNNNTTCB	VGAANNNNN	PBM Franco-Zorrilla et al.(2014) HSFB2A	0.392	0.678
HSFB2A M06952_2.00	Arabidopsis thaliana	GAANNTTCYAGA	TCTRGAANNTTC	Dap-seq OMalley et al.(2016) HSF6_col_a	0.392	0.678
HSFC1 M00868_2.00	Arabidopsis thaliana	NDTCBNNN	NNNVGAHN	PBM Franco-Zorrilla et al.(2014) HSFC1	0.387	0.667
HSFC1 M06943_2.00	Arabidopsis thaliana	GAASNTTCTAG	CTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFC1_col_a	0.387	0.667
HSFC1 M06944_2.00	Arabidopsis thaliana	RGAASNTTCTAGAANVW	WBNTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFC1_colamp_a	0.387	0.667
HSFB2B M06945_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_col_a	0.377	0.667
HSFB2B M06946_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_colamp_a	0.377	0.667
HSFB3 M06937_2.00	Arabidopsis thaliana	RRAANMWTCTAGAAV	BTTCTAGAWKNTTYY	Dap-seq OMalley et al.(2016) HSFB3_col_a	0.353	0.598
HSFB3 M06938_2.00	Arabidopsis thaliana	AABSTTCTAGAAN	NTTCTAGAASVTT	Dap-seq OMalley et al.(2016) HSFB3_colamp_a	0.353	0.598
For this family, TFs with SR scores > 0.318* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo3g081420.1	HSF	61	151	FLTKTYDLVEDSRTNDVVSWSQDKNSFVVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWEFANKGFLRGQKHLLKKITRRK

Links
Other HSF family TFs
Other *Brassica oleracea* TFs

1440 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O9_04726	Exophiala aquamarina	A1O9_04726	N
CFIO01_00876	Colletotrichum fioriniae	CFIO01_00876	N
CGGC5_10948	Colletotrichum gloeosporioides	CGGC5_10948	N
CGGC5_5698	Colletotrichum gloeosporioides	CGGC5_5698	N
Cob_01455	Colletotrichum orbiculare	Cob_01455	N
COCC4DRAFT_203966	Bipolaris maydis	COCC4DRAFT_203966	N
COCCADRAFT_103070	Bipolaris zeicola	COCCADRAFT_103070	N
COCMIDRAFT_108257	Bipolaris oryzae	COCMIDRAFT_108257	N
COCSADRAFT_33801	Bipolaris sorokiniana	COCSADRAFT_33801	N
COCVIDRAFT_110225	Bipolaris victoriae	COCVIDRAFT_110225	N
estExt_Genewise1Plus.C_260021	Cochliobolus heterostrophus C5	estExt_Genewise1Plus.C_260021	N
FFUJ_09328	Fusarium fujikuroi	FFUJ_09328	N
fgenesh1_pm.sca_33_chr6_1_0000053	Nectria haematococca	fgenesh1_pm.sca_33_chr6_1_0000053	N
FGRRES_03912	Fusarium graminearum	FGRRES_03912	N
FOXG_11743	Fusarium oxysporum	FOXG_11743	N
FPSE_05364	Fusarium pseudograminearum	FPSE_05364	N
FVEG_10069	Fusarium verticillioides	FVEG_10069	N
MGG_15021	Magnaporthe oryzae	MGG_15021	N
NechaG94027	Fusarium solani	NechaG94027	N
OIDMADRAFT_104528	Oidiodendron maius	OIDMADRAFT_104528	N
Pc20g04200	Penicillium chrysogenum	Pc20g04200	N
PCH_Pc20g04200	Penicillium rubens	PCH_Pc20g04200	N
PTT_12878	Pyrenophora teres	PTT_12878	N
PVAR5_4503	Byssochlamys spectabilis	PVAR5_4503	N
V499_02546	Pseudogymnoascus pannorum	V499_02546	N
VDAG_06371	Verticillium dahliae	VDAG_06371	N

Bo3g081420 (Brassica oleracea) HSF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1440 Related TFs

Bo3g081420 **(Brassica oleracea)
HSF**