CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo3g081420
(
Brassica oleracea
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
Bo3g081420
T239788_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.566
0.897
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.566
0.897
HSFA6A
M06950_2.00
Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_col_a
0.469
0.690
HSFA6A
M06951_2.00
Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a
0.469
0.690
HSFA1B
M06948_2.00
Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF3_col_a
0.466
0.759
HSFA1B
M06949_2.00
Arabidopsis thaliana
TTCYRG
CYRGAA
Dap-seq
OMalley et al.(2016)
HSF3_colamp_a
0.466
0.759
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.444
0.690
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.441
0.736
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.441
0.736
HSFB4
M06936_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFB4_col_a
0.414
0.701
HSFB2A
M00869_2.00
Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN
PBM
Franco-Zorrilla et al.(2014)
HSFB2A
0.392
0.678
HSFB2A
M06952_2.00
Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF6_col_a
0.392
0.678
HSFC1
M00868_2.00
Arabidopsis thaliana
NDTCBNNN
NNNVGAHN
PBM
Franco-Zorrilla et al.(2014)
HSFC1
0.387
0.667
HSFC1
M06943_2.00
Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFC1_col_a
0.387
0.667
HSFC1
M06944_2.00
Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a
0.387
0.667
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.377
0.667
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.377
0.667
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.353
0.598
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.353
0.598
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo3g081420.1
HSF
61
151
FLTKTYDLVEDSRTNDVVSWSQDKNSFVVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWEFANKGFLRGQKHLLKKITRRK
Links
Other
HSF
family TFs
Other
Brassica oleracea
TFs
1440 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A1O9_04726
Exophiala aquamarina
A1O9_04726
N
CFIO01_00876
Colletotrichum fioriniae
CFIO01_00876
N
CGGC5_10948
Colletotrichum gloeosporioides
CGGC5_10948
N
CGGC5_5698
Colletotrichum gloeosporioides
CGGC5_5698
N
Cob_01455
Colletotrichum orbiculare
Cob_01455
N
COCC4DRAFT_203966
Bipolaris maydis
COCC4DRAFT_203966
N
COCCADRAFT_103070
Bipolaris zeicola
COCCADRAFT_103070
N
COCMIDRAFT_108257
Bipolaris oryzae
COCMIDRAFT_108257
N
COCSADRAFT_33801
Bipolaris sorokiniana
COCSADRAFT_33801
N
COCVIDRAFT_110225
Bipolaris victoriae
COCVIDRAFT_110225
N
estExt_Genewise1Plus.C_260021
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_260021
N
FFUJ_09328
Fusarium fujikuroi
FFUJ_09328
N
fgenesh1_pm.sca_33_chr6_1_0000053
Nectria haematococca
fgenesh1_pm.sca_33_chr6_1_0000053
N
FGRRES_03912
Fusarium graminearum
FGRRES_03912
N
FOXG_11743
Fusarium oxysporum
FOXG_11743
N
FPSE_05364
Fusarium pseudograminearum
FPSE_05364
N
FVEG_10069
Fusarium verticillioides
FVEG_10069
N
MGG_15021
Magnaporthe oryzae
MGG_15021
N
NechaG94027
Fusarium solani
NechaG94027
N
OIDMADRAFT_104528
Oidiodendron maius
OIDMADRAFT_104528
N
Pc20g04200
Penicillium chrysogenum
Pc20g04200
N
PCH_Pc20g04200
Penicillium rubens
PCH_Pc20g04200
N
PTT_12878
Pyrenophora teres
PTT_12878
N
PVAR5_4503
Byssochlamys spectabilis
PVAR5_4503
N
V499_02546
Pseudogymnoascus pannorum
V499_02546
N
VDAG_06371
Verticillium dahliae
VDAG_06371
N