CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo5g093470
(
Brassica oleracea
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
Bo5g093470
T239804_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.569
0.920
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.569
0.920
HSFA6A
M06950_2.00
Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_col_a
0.470
0.690
HSFA6A
M06951_2.00
Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a
0.470
0.690
HSFA1B
M06948_2.00
Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF3_col_a
0.466
0.747
HSFA1B
M06949_2.00
Arabidopsis thaliana
TTCYRG
CYRGAA
Dap-seq
OMalley et al.(2016)
HSF3_colamp_a
0.466
0.747
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.447
0.701
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.442
0.713
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.442
0.713
HSFB4
M06936_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFB4_col_a
0.414
0.690
HSFB2A
M00869_2.00
Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN
PBM
Franco-Zorrilla et al.(2014)
HSFB2A
0.395
0.655
HSFB2A
M06952_2.00
Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF6_col_a
0.395
0.655
HSFC1
M00868_2.00
Arabidopsis thaliana
NDTCBNNN
NNNVGAHN
PBM
Franco-Zorrilla et al.(2014)
HSFC1
0.390
0.690
HSFC1
M06943_2.00
Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFC1_col_a
0.390
0.690
HSFC1
M06944_2.00
Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a
0.390
0.690
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.381
0.655
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.381
0.655
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.354
0.598
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.354
0.598
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo5g093470.1
HSF
61
151
FLTKTYDLVEDSRTNHVVSWSQAKNSFIVWDPQAFSTSLLPRFFKHNNFSSFARQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKTIRRRK
Links
Other
HSF
family TFs
Other
Brassica oleracea
TFs
1439 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTERF2
Ochotona princeps
ENSOPRG00000008669
N
Myotis_brandtii_Cry1_10020414
Myotis brandtii
Myotis_brandtii_Cry1_10020414
N
MTERF2
Vicugna pacos
ENSVPAG00000008539
N
MTERF2
Tursiops truncatus
ENSTTRG00000012809
N
ENSTSYG00000010530
Tarsius syrichta
ENSTSYG00000010530
N
ENSSTOG00000010181
Ictidomys tridecemlineatus
ENSSTOG00000010181
N
Mterf2
Rattus norvegicus
ENSRNOG00000006978
N
MTERF2
Pan troglodytes
ENSPTRG00000005395
N
ENSPPYG00000004910
Pongo abelii
ENSPPYG00000004910
N
MTERF2
Procavia capensis
ENSPCAG00000008234
N
MTERF2
Bos taurus
ENSBTAG00000010144
N
ENSNLEG00000006719
Nomascus leucogenys
ENSNLEG00000006719
N
Mterf2
Mus musculus
ENSMUSG00000049038
N
MTERF2
Monodelphis domestica
ENSMODG00000001589
N
ENSMEUG00000013008
Macropus eugenii
ENSMEUG00000013008
N
MTERF2
Gorilla gorilla
ENSGGOG00000025492
N
MTERF2
Homo sapiens
ENSG00000120832
N
Mterf2
Dipodomys ordii
ENSDORG00000004167
N
MTERF2
Cavia porcellus
ENSCPOG00000006958
N
MTERF2
Callithrix jacchus
ENSCJAG00000015094
N