CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0003s09370
(
Populus trichocarpa
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
POPTR_0003s09370
T241845_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.531
0.874
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.531
0.874
HSFA1B
M06948_2.00
Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF3_col_a
0.505
0.851
HSFA1B
M06949_2.00
Arabidopsis thaliana
TTCYRG
CYRGAA
Dap-seq
OMalley et al.(2016)
HSF3_colamp_a
0.505
0.851
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.502
0.736
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.494
0.770
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.494
0.770
HSFB4
M06936_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFB4_col_a
0.480
0.770
HSFA6A
M06950_2.00
Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_col_a
0.441
0.667
HSFA6A
M06951_2.00
Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a
0.441
0.667
HSFB2A
M00869_2.00
Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN
PBM
Franco-Zorrilla et al.(2014)
HSFB2A
0.437
0.690
HSFB2A
M06952_2.00
Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF6_col_a
0.437
0.690
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.429
0.713
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.429
0.713
HSFC1
M00868_2.00
Arabidopsis thaliana
NDTCBNNN
NNNVGAHN
PBM
Franco-Zorrilla et al.(2014)
HSFC1
0.418
0.701
HSFC1
M06943_2.00
Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFC1_col_a
0.418
0.701
HSFC1
M06944_2.00
Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a
0.418
0.701
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.398
0.655
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.398
0.655
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0003s09370.1
HSF
37
127
FLSKTYDMVDDPATDAVVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRIISRRK
Links
Other
HSF
family TFs
Other
Populus trichocarpa
TFs
1499 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ANCCAN_16811
Ancylostoma caninum
ANCCAN_16811
I
ANCCEY_05231
Ancylostoma ceylanicum
ANCCEY_05231
N
DICVIV_04175
Dictyocaulus viviparus
DICVIV_04175
I
HCOI00086900
Haemonchus contortus
HCOI00086900
I
HCOI00493700
Haemonchus contortus
HCOI00493700
I
HPLM_0002138101
Haemonchus placei
HPLM_0002138101
I
NBR_0000650501
Nippostrongylus brasiliensis
NBR_0000650501
I
OESDEN_17348
Oesophagostomum dentatum
OESDEN_17348
N
PTRK_0000106800
Parastrongyloides trichosuri
PTRK_0000106800
I
SPAL_0001069200
Strongyloides papillosus
SPAL_0001069200
I
SSTP_0000751800
Strongyloides stercoralis
SSTP_0000751800
I
SVE_1651600
Strongyloides venezuelensis
SVE_1651600
I