CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Traes_2BS_ECF9B4EB4
(
Triticum aestivum
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
Traes_2BS_ECF9B4EB4
T242311_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.483
0.805
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.483
0.805
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.435
0.782
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.435
0.782
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.429
0.724
HSFA6A
M06950_2.00
Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_col_a
0.427
0.713
HSFA6A
M06951_2.00
Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a
0.427
0.713
HSFA1B
M06948_2.00
Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF3_col_a
0.411
0.782
HSFA1B
M06949_2.00
Arabidopsis thaliana
TTCYRG
CYRGAA
Dap-seq
OMalley et al.(2016)
HSF3_colamp_a
0.411
0.782
HSFB4
M06936_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFB4_col_a
0.396
0.678
HSFB2A
M00869_2.00
Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN
PBM
Franco-Zorrilla et al.(2014)
HSFB2A
0.383
0.632
HSFB2A
M06952_2.00
Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF6_col_a
0.383
0.632
HSFC1
M00868_2.00
Arabidopsis thaliana
NDTCBNNN
NNNVGAHN
PBM
Franco-Zorrilla et al.(2014)
HSFC1
0.378
0.690
HSFC1
M06943_2.00
Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFC1_col_a
0.378
0.690
HSFC1
M06944_2.00
Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a
0.378
0.690
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.371
0.632
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.371
0.632
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.360
0.644
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.360
0.644
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Traes_2BS_ECF9B4EB4.1
HSF
44
134
FLTKTYDMVDDPNTDSIMSWSSGNNSFVVWDPHAFATVLLPRHFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRK
Links
Other
HSF
family TFs
Other
Triticum aestivum
TFs
1414 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Al_scaffold_0007_76
Arabidopsis lyrata
Al_scaffold_0007_76
I
Aquca_006_00159
Aquilegia coerulea
Aquca_006_00159
I
AT4G38900
Arabidopsis thaliana
AT4G38900
I
BGIOSGA011761
Oryza indica
BGIOSGA011761
N
BGIOSGA029105
Oryza indica
BGIOSGA029105
I
BGIOSGA029106
Oryza indica
BGIOSGA029106
I
Bo3g149620
Brassica oleracea
Bo3g149620
I
Bo7g119550
Brassica oleracea
Bo7g119550
I
Bostr.25542s0069
Boechera stricta
Bostr.25542s0069
I
Bra010722
Brassica rapa
Bra010722
I
Bra033582
Brassica rapa
Bra033582
I
BRADI1G76690
Brachypodium distachyon
BRADI1G76690
N
BRADI3G31890
Brachypodium distachyon
BRADI3G31890
N
BRADI3G41980
Brachypodium distachyon
BRADI3G41980
I
BRADI5G14497
Brachypodium distachyon
BRADI5G14497
I
Cagra.1383s0070
Capsella grandiflora
Cagra.1383s0070
N
Carubv10004500m.g
Capsella rubella
Carubv10004500m.g
N
cassava30160.valid.m1
Manihot esculenta
cassava30160.valid.m1
I
cassava38273.valid.m1
Manihot esculenta
cassava38273.valid.m1
I
Ca_27693
Cicer arietinum
Ca_27693
I
Ciclev10028062m.g
Citrus clementina
Ciclev10028062m.g
I
Cla016124
Citrullus lanatus
Cla016124
I
Cla016125
Citrullus lanatus
Cla016125
I
Cucsa.382180
Cucumis sativus
Cucsa.382180
I
Cucsa.382190
Cucumis sativus
Cucsa.382190
I
estExt_gwp_gw1.C_200078
Physcomitrella patens
estExt_gwp_gw1.C_200078
I
estExt_gwp_gw1.C_5120003
Physcomitrella patens
estExt_gwp_gw1.C_5120003
I
Eucgr.I01335
Eucalyptus grandis
Eucgr.I01335
I
evm.TU.supercontig_150.7
Carica papaya
evm.TU.supercontig_150.7
I
evm.TU.supercontig_81.160
Carica papaya
evm.TU.supercontig_81.160
I
e_gw1.20.99.1
Physcomitrella patens
e_gw1.20.99.1
I
F775_32059
Aegilops tauschii
F775_32059
I
F775_33214
Aegilops tauschii
F775_33214
N
gene01680-v1.0-hybrid
Fragaria vesca
gene01680-v1.0-hybrid
I
GLYMA04G02850
Glycine max
GLYMA04G02850
I
GLYMA11G11791
Glycine max
GLYMA11G11791
I
GLYMA12G04050
Glycine max
GLYMA12G04050
I
Gorai.001G243800
Gossypium raimondii
Gorai.001G243800
I
Gorai.005G248900
Gossypium raimondii
Gorai.005G248900
I
Gorai.011G140400
Gossypium raimondii
Gorai.011G140400
I
GRMZM2G353553
Zea mays
GRMZM2G353553
N
GRMZM2G428184
Zea mays
GRMZM2G428184
N
GRMZM2G473274
Zea mays
GRMZM2G473274
N
GSMUA_Achr11G14990_001
Musa acuminata
GSMUA_Achr11G14990_001
I
GSMUA_Achr1G08090_001
Musa acuminata
GSMUA_Achr1G08090_001
N
GSMUA_Achr3G12290_001
Musa acuminata
GSMUA_Achr3G12290_001
I
GSMUA_Achr5G25700_001
Musa acuminata
GSMUA_Achr5G25700_001
I
GSMUA_Achr8G12090_001
Musa acuminata
GSMUA_Achr8G12090_001
I
GSMUA_AchrUn_randomG00680_001
Musa acuminata
GSMUA_AchrUn_randomG00680_001
I
gw1.20.225.1
Physcomitrella patens
gw1.20.225.1
I
LPERR03G02000
Leersia perrieri
LPERR03G02000
N
LPERR10G12670
Leersia perrieri
LPERR10G12670
N
Lus10018061.g
Linum usitatissimum
Lus10018061.g
I
Lus10042057.g
Linum usitatissimum
Lus10042057.g
I
mgf000302m
Mimulus guttatus
mgf000302m
I
mgf004912m
Mimulus guttatus
mgf004912m
I
MLOC_10725
Hordeum vulgare
MLOC_10725
N
MLOC_64362
Hordeum vulgare
MLOC_64362
I
MLOC_66865
Hordeum vulgare
MLOC_66865
N
MLOC_75510
Hordeum vulgare
MLOC_75510
I
MTR_1g023690
Medicago truncatula
MTR_1g023690
N
MTR_4g072090
Medicago truncatula
MTR_4g072090
I
OB10G23730
Oryza brachyantha
OB10G23730
N
OBART03G02190
Oryza barthii
OBART03G02190
N
OGLUM03G02140
Oryza glumaepatula
OGLUM03G02140
N
OLONG_011520
Oryza longistaminata
OLONG_011520
N
OLONG_016151
Oryza longistaminata
OLONG_016151
N
OMERI03G02030
Oryza meridionalis
OMERI03G02030
N
ONIVA03G01800
Oryza nivara
ONIVA03G01800
N
OPUNC03G01930
Oryza punctata
OPUNC03G01930
N
OPUNC10G15060
Oryza punctata
OPUNC10G15060
N
orange1.1g007579m.g
Citrus sinensis
orange1.1g007579m.g
I
ORGLA03G0019600
Oryza glaberrima
ORGLA03G0019600
N
ORUFI03G01930
Oryza rufipogon
ORUFI03G01930
N
OS03G0127500
Oryza sativa
OS03G0127500
N
OS10G0531900
Oryza sativa
OS10G0531900
N
Pavir.Ia02926
Panicum virgatum
Pavir.Ia02926
N
Pavir.Ib00162
Panicum virgatum
Pavir.Ib00162
N
Pavir.J19159
Panicum virgatum
Pavir.J19159
N
Pavir.J22781
Panicum virgatum
Pavir.J22781
N
Pavir.J29906
Panicum virgatum
Pavir.J29906
N
PDK_20s1312701g003
Phoenix dactylifera
PDK_20s1312701g003
I
PGSC0003DMG400001659
Solanum tuberosum
PGSC0003DMG400001659
I
PK00843.1
Cannabis sativa
PK00843.1
I
POPTR_0004s17080
Populus trichocarpa
POPTR_0004s17080
I
POPTR_0009s12830
Populus trichocarpa
POPTR_0009s12830
I
SapurV1A.0091s0130
Salix purpurea
SapurV1A.0091s0130
I
SapurV1A.0379s0290
Salix purpurea
SapurV1A.0379s0290
I
Sb01g030770
Sorghum bicolor
Sb01g030770
N
Sb01g048710
Sorghum bicolor
Sb01g048710
N
Sb06g021350
Sorghum bicolor
Sb06g021350
I
SELMODRAFT_129846
Selaginella moellendorffii
SELMODRAFT_129846
I
SELMODRAFT_34663
Selaginella moellendorffii
SELMODRAFT_34663
I
SELMODRAFT_77868
Selaginella moellendorffii
SELMODRAFT_77868
I
Si035841m.g
Setaria italica
Si035841m.g
N
Si039566m.g
Setaria italica
Si039566m.g
N
Solyc01g110480.2
Solanum lycopersicum
Solyc01g110480.2
I
TCM_006766
Theobroma cacao
TCM_006766
I
Thhalv10024895m.g
Eutrema salsugineum
Thhalv10024895m.g
I
Traes_1AL_2AC682D6D
Triticum aestivum
Traes_1AL_2AC682D6D
N
Traes_2AL_FA1957F59
Triticum aestivum
Traes_2AL_FA1957F59
I
Traes_7BS_7B68879A9
Triticum aestivum
Traes_7BS_7B68879A9
I
Traes_7DS_3463CAE33
Triticum aestivum
Traes_7DS_3463CAE33
I
TRIUR3_15472
Triticum urartu
TRIUR3_15472
N
TRIUR3_20880
Triticum urartu
TRIUR3_20880
N
TRIUR3_31242
Triticum urartu
TRIUR3_31242
I
VIT_03s0038g00860
Vitis vinifera
VIT_03s0038g00860
I