CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gorai.011G168400 *(Gossypium raimondii)* HSF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00447 (HSF_DNA-bind)	IPR000232	Gorai.011G168400	T243202_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HSFA6B M06941_2.00	Arabidopsis thaliana	RGAASNTTCTAGA	TCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA6B_colamp_a	0.519	0.816
HSFA6B M06942_2.00	Arabidopsis thaliana	RGAABNTTCTRGAAN	NTTCYAGAANVTTCY	Dap-seq OMalley et al.(2016) HSFA6B_col	0.519	0.816
HSFA6A M06950_2.00	Arabidopsis thaliana	GAASNTTCTAGAANNW	WNNTTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_col_a	0.471	0.736
HSFA6A M06951_2.00	Arabidopsis thaliana	GAASNTTCTAGAA	TTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_colamp_a	0.471	0.736
HSFA4A M06947_2.00	Arabidopsis thaliana	NNNRGAABBTTCTAGAANN	NNTTCTAGAAVVTTCYNNN	Dap-seq OMalley et al.(2016) HSF21_col_a	0.433	0.690
HSFA1B M06948_2.00	Arabidopsis thaliana	GAANNTTCTAGA	TCTAGAANNTTC	Dap-seq OMalley et al.(2016) HSF3_col_a	0.431	0.690
HSFA1B M06949_2.00	Arabidopsis thaliana	TTCYRG	CYRGAA	Dap-seq OMalley et al.(2016) HSF3_colamp_a	0.431	0.690
HSFC1 M00868_2.00	Arabidopsis thaliana	NDTCBNNN	NNNVGAHN	PBM Franco-Zorrilla et al.(2014) HSFC1	0.424	0.690
HSFC1 M06943_2.00	Arabidopsis thaliana	GAASNTTCTAG	CTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFC1_col_a	0.424	0.690
HSFC1 M06944_2.00	Arabidopsis thaliana	RGAASNTTCTAGAANVW	WBNTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFC1_colamp_a	0.424	0.690
HSFB4 M06936_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFB4_col_a	0.413	0.632
HSFA1E M06939_2.00	Arabidopsis thaliana	RGAANNTTCTAGA	TCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSFA1E_col_a	0.406	0.655
HSFA1E M06940_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA1E_colamp_a	0.406	0.655
HSFB2A M00869_2.00	Arabidopsis thaliana	NNNNNTTCB	VGAANNNNN	PBM Franco-Zorrilla et al.(2014) HSFB2A	0.395	0.609
HSFB2A M06952_2.00	Arabidopsis thaliana	GAANNTTCYAGA	TCTRGAANNTTC	Dap-seq OMalley et al.(2016) HSF6_col_a	0.395	0.609
HSFB2B M06945_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_col_a	0.383	0.621
HSFB2B M06946_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_colamp_a	0.383	0.621
HSFB3 M06937_2.00	Arabidopsis thaliana	RRAANMWTCTAGAAV	BTTCTAGAWKNTTYY	Dap-seq OMalley et al.(2016) HSFB3_col_a	0.367	0.621
HSFB3 M06938_2.00	Arabidopsis thaliana	AABSTTCTAGAAN	NTTCTAGAASVTT	Dap-seq OMalley et al.(2016) HSFB3_colamp_a	0.367	0.621
For this family, TFs with SR scores > 0.318* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gorai.011G168400.1	HSF	42	132	FLTKTYDIIDDSSTNNIISWGRANNSFIVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVDTDRWEFGNEKFHRGQRHLLKNIRRRK

Links
Other HSF family TFs
Other *Gossypium raimondii* TFs

1441 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSMEUG00000013008	Macropus eugenii	ENSMEUG00000013008	N
ENSNLEG00000006719	Nomascus leucogenys	ENSNLEG00000006719	N
ENSP00000240050-D1	Bos grunniens	ENSP00000240050-D1	N
ENSPPYG00000004910	Pongo abelii	ENSPPYG00000004910	N
ENSSTOG00000010181	Ictidomys tridecemlineatus	ENSSTOG00000010181	N
ENSTSYG00000010530	Tarsius syrichta	ENSTSYG00000010530	N
MTERF2	Callithrix jacchus	ENSCJAG00000015094	N
MTERF2	Vicugna pacos	ENSVPAG00000008539	N
MTERF2	Tursiops truncatus	ENSTTRG00000012809	N
Mterf2	Rattus norvegicus	ENSRNOG00000006978	N
MTERF2	Pan troglodytes	ENSPTRG00000005395	N
MTERF2	Procavia capensis	ENSPCAG00000008234	N
Mterf2	Mus musculus	ENSMUSG00000049038	N
MTERF2	Monodelphis domestica	ENSMODG00000001589	N
MTERF2	Gorilla gorilla	ENSGGOG00000025492	N
MTERF2	Homo sapiens	ENSG00000120832	N
Mterf2	Dipodomys ordii	ENSDORG00000004167	N
MTERF2	Bos taurus	ENSBTAG00000010144	N
Myotis_brandtii_Cry1_10020414	Myotis brandtii	Myotis_brandtii_Cry1_10020414	N

Gorai.011G168400 (Gossypium raimondii) HSF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1441 Related TFs

Gorai.011G168400 **(Gossypium raimondii)
HSF**