CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AMTR_s00016p00083040
(
Amborella trichopoda
)
Leafy
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01698 (FLO_LFY)
IPR002910
AMTR_s00016p00083040
T244678_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LFY
M02692_2.00
Arabidopsis thaliana
YWTKRACCRSYGGTYMAWR
YWTKRACCRSYGGTYMAWR
SELEX
Mathelier et al.(2014)
MA0590.1
0.774
0.774
LFY
M10895_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$LFY_Q2
0.774
0.774
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ERN06132
Leafy
1
375
MDPDPFSVTLFKWDHHHHRPAPPPNRLLLQEATATVTPPPPQTPASFCRPKELGGLEDLFQQYGVRYFTVAKMVEMGFTVNTLVNMREEEIDEMMGSLGEIFRWELLMGERYGIKSAIRAERRRLEEEEARQRQQHHQHHQLLVVGGGGGEVNHHLDALSQEGLSEEPVQEEKEAAGSGGGGQWEASEGKKHRRRRATKGNVGGDAEEGSSGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYDECRNFLIQVQALAKERGEKCPNKVTNQVFRHAKRAGASHINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYHPLVAMSRHHHAWDVDALFASHPSLAIWYVPTKLRQLCHADRHSVT
Links
Other
Leafy
family TFs
Other
Amborella trichopoda
TFs
60 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LFY
Arabidopsis thaliana
AT5G61850
D
0.774
Solyc03g118160.1
Solanum lycopersicum
Solyc03g118160.1
I
0.798
chr1.CM0094.750.nd
Lotus japonicus
chr1.CM0094.750.nd
I
0.820
TCM_014768
Theobroma cacao
TCM_014768
I
0.804
Traes_2AL_83D0D0C3F
Triticum aestivum
Traes_2AL_83D0D0C3F
I
0.732
Traes_2BL_8DEC0EFBF
Triticum aestivum
Traes_2BL_8DEC0EFBF
I
0.732
LFY
Vitis vinifera
VIT_17s0000g00150
I
0.804
Ca_01386
Cicer arietinum
Ca_01386
I
0.804
Cla019619
Citrullus lanatus
Cla019619
I
0.810
30147.m014401
Ricinus communis
30147.m014401
I
0.833
cassava19992.m1
Manihot esculenta
cassava19992.m1
I
0.798
cassava40548.m1
Manihot esculenta
cassava40548.m1
I
0.804
Cucsa.156880
Cucumis sativus
Cucsa.156880
I
0.804
mgf013601m
Mimulus guttatus
mgf013601m
I
0.792
mgf020579m
Mimulus guttatus
mgf020579m
I
0.762
Aquca_043_00044
Aquilegia coerulea
Aquca_043_00044
I
0.756
Bostr.26833s0050
Boechera stricta
Bostr.26833s0050
I
0.774
Cagra.4553s0022
Capsella grandiflora
Cagra.4553s0022
I
0.768
Carubv10028602m.g
Capsella rubella
Carubv10028602m.g
I
0.768
Ciclev10033942m.g
Citrus clementina
Ciclev10033942m.g
I
0.804
Eucgr.K02192
Eucalyptus grandis
Eucgr.K02192
I
0.810
gene33406-v1.0-hybrid
Fragaria vesca
gene33406-v1.0-hybrid
I
0.720
Gorai.001G053900
Gossypium raimondii
Gorai.001G053900
I
0.804
Lus10016732.g
Linum usitatissimum
Lus10016732.g
I
0.792
Lus10022427.g
Linum usitatissimum
Lus10022427.g
I
0.798
orange1.1g044766m.g
Citrus sinensis
orange1.1g044766m.g
I
0.804
Pavir.Ga00621
Panicum virgatum
Pavir.Ga00621
I
0.750
Pavir.Gb00795
Panicum virgatum
Pavir.Gb00795
I
0.756
SapurV1A.2394s0010
Salix purpurea
SapurV1A.2394s0010
I
0.804
Thhalv10005606m.g
Eutrema salsugineum
Thhalv10005606m.g
I
0.774
LFY
Arabidopsis lyrata
Al_scaffold_0008_2690
I
0.774
OBART04G23870
Oryza barthii
OBART04G23870
I
0.756
OSL
Oryza indica
BGIOSGA014428
I
0.756
Bo2g161690
Brassica oleracea
Bo2g161690
I
0.786
Bo3g109270
Brassica oleracea
Bo3g109270
I
0.774
Bra019619
Brassica rapa
Bra019619
I
0.768
Bra029305
Brassica rapa
Bra029305
I
0.786
BRADI5G20340
Brachypodium distachyon
BRADI5G20340
I
0.732
GLYMA04G37900
Glycine max
GLYMA04G37900
I
0.746
GLYMA06G17170
Glycine max
GLYMA06G17170
I
0.792
GRMZM2G098813
Zea mays
GRMZM2G098813
I
0.732
GRMZM2G180190
Zea mays
GRMZM2G180190
I
0.756
GSMUA_Achr6G16390_001
Musa acuminata
GSMUA_Achr6G16390_001
I
0.792
LPERR04G19570
Leersia perrieri
LPERR04G19570
I
0.702
MTR_3g098560
Medicago truncatula
MTR_3g098560
I
0.810
OB04G30790
Oryza brachyantha
OB04G30790
I
0.750
Si011756m.g
Setaria italica
Si011756m.g
I
0.751
OGLUM04G23830
Oryza glumaepatula
OGLUM04G23830
I
0.756
OLONG_021167
Oryza longistaminata
OLONG_021167
I
0.756
OMERI04G19760
Oryza meridionalis
OMERI04G19760
I
0.756
ONIVA04G23030
Oryza nivara
ONIVA04G23030
I
0.756
OPUNC04G21410
Oryza punctata
OPUNC04G21410
I
0.756
ORGLA04G0204600
Oryza glaberrima
ORGLA04G0204600
I
0.756
ORUFI04G25610
Oryza rufipogon
ORUFI04G25610
I
0.756
FL
Oryza sativa
OS04G0598300
I
0.756
PGSC0003DMG400014174
Solanum tuberosum
PGSC0003DMG400014174
I
0.778
FL
Populus trichocarpa
POPTR_0015s11820
I
0.810
PRUPE_ppa006372mg
Prunus persica
PRUPE_ppa006372mg
I
0.792
Sb06g027340
Sorghum bicolor
Sb06g027340
I
0.756
SELMODRAFT_85923
Selaginella moellendorffii
SELMODRAFT_85923
I
0.707