CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LBD3
(
Arabidopsis lyrata
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Al_scaffold_0001_1711
T244832_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.747
0.747
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.737
0.737
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Al_scaffold_0001_1711
LOB
14
112
PCAGCKLLRRKCVKDCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVNSMVYEANARVQDPVYGCVGTISSLHRQLETLQTQLAFAQA
Links
Other
LOB
family TFs
Other
Arabidopsis lyrata
TFs
201 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10009386m.g
Eutrema salsugineum
Thhalv10009386m.g
I
0.980
LBD3
Arabidopsis thaliana
AT1G16530
I
0.970
Bostr.7128s0261
Boechera stricta
Bostr.7128s0261
I
0.970
Bo8g105450
Brassica oleracea
Bo8g105450
I
0.960
Bra026716
Brassica rapa
Bra026716
I
0.960
Cagra.0824s0026
Capsella grandiflora
Cagra.0824s0026
I
0.960
Bra026042
Brassica rapa
Bra026042
I
0.939
Bo5g021980
Brassica oleracea
Bo5g021980
I
0.919
PRUPE_ppa012253mg
Prunus persica
PRUPE_ppa012253mg
I
0.798
TCM_032557
Theobroma cacao
TCM_032557
I
0.798
Cla013678
Citrullus lanatus
Cla013678
I
0.798
Pm011040
Prunus mume
Pm011040
I
0.798
30169.m006340
Ricinus communis
30169.m006340
I
0.798
cassava20471.m1
Manihot esculenta
cassava20471.m1
I
0.798
cassava30732.valid.m1
Manihot esculenta
cassava30732.valid.m1
I
0.798
Cucsa.118370
Cucumis sativus
Cucsa.118370
I
0.798
gene30046-v1.0-hybrid
Fragaria vesca
gene30046-v1.0-hybrid
I
0.798
MDP0000268890
Malus domestica
MDP0000268890
I
0.798
MDP0000284409
Malus domestica
MDP0000284409
I
0.798
PK11564.1
Cannabis sativa
PK11564.1
I
0.798
GLYMA08G17990
Glycine max
GLYMA08G17990
I
0.788
MTR_2g068760
Medicago truncatula
MTR_2g068760
I
0.788
POPTR_0007s08290
Populus trichocarpa
POPTR_0007s08290
I
0.788
PRUPE_ppa012322mg
Prunus persica
PRUPE_ppa012322mg
I
0.788
LBD3
Vitis vinifera
VIT_19s0027g01120
I
0.788
Ca_13575
Cicer arietinum
Ca_13575
I
0.788
cassava27818.m1
Manihot esculenta
cassava27818.m1
I
0.788
Aquca_118_00035
Aquilegia coerulea
Aquca_118_00035
I
0.788
Ciclev10006113m.g
Citrus clementina
Ciclev10006113m.g
I
0.788
evm.TU.supercontig_192.6
Carica papaya
evm.TU.supercontig_192.6
I
0.788
gene20083-v1.0-hybrid
Fragaria vesca
gene20083-v1.0-hybrid
I
0.788
Gorai.011G051200
Gossypium raimondii
Gorai.011G051200
I
0.788
MDP0000121203
Malus domestica
MDP0000121203
I
0.788
orange1.1g044340m.g
Citrus sinensis
orange1.1g044340m.g
I
0.788
GLYMA07G35000
Glycine max
GLYMA07G35000
I
0.778
GLYMA20G02850
Glycine max
GLYMA20G02850
I
0.778
PGSC0003DMG400008649
Solanum tuberosum
PGSC0003DMG400008649
I
0.778
POPTR_0001s11610
Populus trichocarpa
POPTR_0001s11610
I
0.778
POPTR_0003s14880
Populus trichocarpa
POPTR_0003s14880
I
0.778
Solyc11g045530.1
Solanum lycopersicum
Solyc11g045530.1
I
0.778
TCM_029315
Theobroma cacao
TCM_029315
I
0.778
LBD4
Vitis vinifera
VIT_00s0125g00290
I
0.778
Ca_06548
Cicer arietinum
Ca_06548
I
0.778
Ciclev10016993m.g
Citrus clementina
Ciclev10016993m.g
I
0.778
Eucgr.F04424
Eucalyptus grandis
Eucgr.F04424
I
0.778
Gorai.002G104500
Gossypium raimondii
Gorai.002G104500
I
0.778
Gorai.009G149900
Gossypium raimondii
Gorai.009G149900
I
0.778
Lus10031191.g
Linum usitatissimum
Lus10031191.g
I
0.778
orange1.1g031034m.g
Citrus sinensis
orange1.1g031034m.g
I
0.778
SapurV1A.0059s0540
Salix purpurea
SapurV1A.0059s0540
I
0.778
SapurV1A.0085s0450
Salix purpurea
SapurV1A.0085s0450
I
0.778
SapurV1A.0094s0480
Salix purpurea
SapurV1A.0094s0480
I
0.778
SapurV1A.0284s0080
Salix purpurea
SapurV1A.0284s0080
I
0.778
PK24688.1
Cannabis sativa
PK24688.1
I
0.778
chr4.CM0229.130.nc
Lotus japonicus
chr4.CM0229.130.nc
I
0.778
GLYMA09G02510
Glycine max
GLYMA09G02510
I
0.768
GLYMA15G13410
Glycine max
GLYMA15G13410
I
0.768
MTR_4g083680
Medicago truncatula
MTR_4g083680
I
0.768
PGSC0003DMG400021204
Solanum tuberosum
PGSC0003DMG400021204
I
0.768
Lus10031769.g
Linum usitatissimum
Lus10031769.g
I
0.768
Lus10040638.g
Linum usitatissimum
Lus10040638.g
I
0.768
GLYMA15G41020
Glycine max
GLYMA15G41020
I
0.758
Solyc12g100150.1
Solanum lycopersicum
Solyc12g100150.1
I
0.758
mgf022958m
Mimulus guttatus
mgf022958m
I
0.758
mgf026046m
Mimulus guttatus
mgf026046m
I
0.758
Bostr.15697s0446
Boechera stricta
Bostr.15697s0446
I
0.758
Ciclev10006208m.g
Citrus clementina
Ciclev10006208m.g
I
0.758
Gorai.010G170700
Gossypium raimondii
Gorai.010G170700
I
0.758
Lus10018275.g
Linum usitatissimum
Lus10018275.g
I
0.758
orange1.1g041989m.g
Citrus sinensis
orange1.1g041989m.g
I
0.758
chr3.CM0176.110.nc
Lotus japonicus
chr3.CM0176.110.nc
I
0.758
POPTR_0005s10050
Populus trichocarpa
POPTR_0005s10050
I
0.750
LBD4
Arabidopsis thaliana
AT1G31320
D
0.747
Bo7g041000
Brassica oleracea
Bo7g041000
I
0.747
Bra014907
Brassica rapa
Bra014907
I
0.747
LBD4
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002773
I
0.747
MTR_5g083230
Medicago truncatula
MTR_5g083230
I
0.747
Solyc02g069440.2
Solanum lycopersicum
Solyc02g069440.2
I
0.747
Cla009336
Citrullus lanatus
Cla009336
I
0.747
Cucsa.236600
Cucumis sativus
Cucsa.236600
I
0.747
Cagra.1508s0061
Capsella grandiflora
Cagra.1508s0061
I
0.747
Carubv10010462m.g
Capsella rubella
Carubv10010462m.g
I
0.747
Eucgr.E02016
Eucalyptus grandis
Eucgr.E02016
I
0.747
Thhalv10008917m.g
Eutrema salsugineum
Thhalv10008917m.g
I
0.747
Bo4g170770
Brassica oleracea
Bo4g170770
I
0.737
Bra021612
Brassica rapa
Bra021612
I
0.737
PGSC0003DMG402023851
Solanum tuberosum
PGSC0003DMG402023851
I
0.737
Sb01g012810
Sorghum bicolor
Sb01g012810
I
0.737
gw1.238.28.1
Physcomitrella patens
gw1.238.28.1
D
0.737
gw1.66.118.1
Physcomitrella patens
gw1.66.118.1
I
0.737
Eucgr.B03991
Eucalyptus grandis
Eucgr.B03991
I
0.737
evm.TU.supercontig_19.133
Carica papaya
evm.TU.supercontig_19.133
I
0.737
SapurV1A.0061s0670
Salix purpurea
SapurV1A.0061s0670
I
0.737
LBD12
Arabidopsis thaliana
AT2G30130
I
0.727
Bo4g059700
Brassica oleracea
Bo4g059700
I
0.727
Bra018335
Brassica rapa
Bra018335
I
0.727
ASL5
Arabidopsis lyrata
fgenesh2_kg.4__983__AT2G30130.1
I
0.727
GLYMA02G43030
Glycine max
GLYMA02G43030
I
0.727
GLYMA14G06140
Glycine max
GLYMA14G06140
I
0.727
GRMZM2G079185
Zea mays
GRMZM2G079185
I
0.727
GSMUA_Achr2G13170_001
Musa acuminata
GSMUA_Achr2G13170_001
I
0.727
LPERR03G23450
Leersia perrieri
LPERR03G23450
I
0.727
MTR_3g071590
Medicago truncatula
MTR_3g071590
I
0.727
POPTR_0001s28840
Populus trichocarpa
POPTR_0001s28840
I
0.727
POPTR_0008s07280
Populus trichocarpa
POPTR_0008s07280
I
0.727
PRUPE_ppa012504mg
Prunus persica
PRUPE_ppa012504mg
I
0.727
SELMODRAFT_49084
Selaginella moellendorffii
SELMODRAFT_49084
I
0.727
SELMODRAFT_49085
Selaginella moellendorffii
SELMODRAFT_49085
I
0.727
Si037583m.g
Setaria italica
Si037583m.g
I
0.727
TCM_042447
Theobroma cacao
TCM_042447
I
0.727
Ca_12450
Cicer arietinum
Ca_12450
I
0.727
Pm018982
Prunus mume
Pm018982
I
0.727
29729.m002278
Ricinus communis
29729.m002278
I
0.727
cassava20865.m1
Manihot esculenta
cassava20865.m1
I
0.727
cassava26200.m1
Manihot esculenta
cassava26200.m1
I
0.727
Aquca_030_00227
Aquilegia coerulea
Aquca_030_00227
I
0.727
Bostr.29246s0022
Boechera stricta
Bostr.29246s0022
I
0.727
Carubv10025543m.g
Capsella rubella
Carubv10025543m.g
I
0.727
Ciclev10029962m.g
Citrus clementina
Ciclev10029962m.g
I
0.727
gene28202-v1.0-hybrid
Fragaria vesca
gene28202-v1.0-hybrid
I
0.727
Gorai.010G195100
Gossypium raimondii
Gorai.010G195100
I
0.727
Lus10031855.g
Linum usitatissimum
Lus10031855.g
I
0.727
MDP0000265429
Malus domestica
MDP0000265429
I
0.727
MDP0000861160
Malus domestica
MDP0000861160
I
0.727
Pavir.Ia01095
Panicum virgatum
Pavir.Ia01095
I
0.727
Pavir.Ib04170
Panicum virgatum
Pavir.Ib04170
I
0.727
SapurV1A.0673s0190
Salix purpurea
SapurV1A.0673s0190
I
0.727
BGIOSGA013249
Oryza indica
BGIOSGA013249
I
0.717
BGIOSGA018244
Oryza indica
BGIOSGA018244
I
0.717
BGIOSGA018245
Oryza indica
BGIOSGA018245
I
0.717
GSMUA_Achr5G29470_001
Musa acuminata
GSMUA_Achr5G29470_001
I
0.717
GSMUA_Achr7G00880_001
Musa acuminata
GSMUA_Achr7G00880_001
I
0.717
GSMUA_Achr8G02800_001
Musa acuminata
GSMUA_Achr8G02800_001
I
0.717
LPERR05G10020
Leersia perrieri
LPERR05G10020
I
0.717
MLOC_54949
Hordeum vulgare
MLOC_54949
I
0.717
OB05G20740
Oryza brachyantha
OB05G20740
I
0.717
OBART05G12620
Oryza barthii
OBART05G12620
I
0.717
OGLUM04G05130
Oryza glumaepatula
OGLUM04G05130
I
0.717
OGLUM05G13250
Oryza glumaepatula
OGLUM05G13250
I
0.717
OMERI03G24920
Oryza meridionalis
OMERI03G24920
I
0.717
OMERI05G11330
Oryza meridionalis
OMERI05G11330
I
0.717
ONIVA03G29300
Oryza nivara
ONIVA03G29300
I
0.717
ONIVA05G13090
Oryza nivara
ONIVA05G13090
I
0.717
OPUNC05G10670
Oryza punctata
OPUNC05G10670
I
0.717
ORGLA05G0108100
Oryza glaberrima
ORGLA05G0108100
I
0.717
ORUFI03G29410
Oryza rufipogon
ORUFI03G29410
I
0.717
ORUFI05G13610
Oryza rufipogon
ORUFI05G13610
I
0.717
OS05G0346800
Oryza sativa
OS05G0346800
I
0.717
PGSC0003DMG400030456
Solanum tuberosum
PGSC0003DMG400030456
I
0.717
POPTR_0010s19180
Populus trichocarpa
POPTR_0010s19180
I
0.717
PRUPE_ppa012275mg
Prunus persica
PRUPE_ppa012275mg
I
0.717
Sb09g016240
Sorghum bicolor
Sb09g016240
I
0.717
Si024229m.g
Setaria italica
Si024229m.g
I
0.717
Solyc06g082310.2
Solanum lycopersicum
Solyc06g082310.2
I
0.717
TCM_042212
Theobroma cacao
TCM_042212
I
0.717
Traes_1AL_DB7593004
Triticum aestivum
Traes_1AL_DB7593004
I
0.717
Traes_1BL_04EFBAECF
Triticum aestivum
Traes_1BL_04EFBAECF
I
0.717
ASL5
Vitis vinifera
VIT_06s0004g07200
I
0.717
VIT_13s0067g01880
Vitis vinifera
VIT_13s0067g01880
I
0.717
Ca_08998
Cicer arietinum
Ca_08998
I
0.717
Cla005598
Citrullus lanatus
Cla005598
I
0.717
Cla007354
Citrullus lanatus
Cla007354
I
0.717
Pm000193
Prunus mume
Pm000193
I
0.717
Cucsa.144430
Cucumis sativus
Cucsa.144430
I
0.717
Cucsa.239660
Cucumis sativus
Cucsa.239660
I
0.717
mgf018189m
Mimulus guttatus
mgf018189m
I
0.717
Ciclev10032929m.g
Citrus clementina
Ciclev10032929m.g
I
0.717
Eucgr.J00175
Eucalyptus grandis
Eucgr.J00175
I
0.717
evm.TU.supercontig_2.374
Carica papaya
evm.TU.supercontig_2.374
I
0.717
gene21039-v1.0-hybrid
Fragaria vesca
gene21039-v1.0-hybrid
I
0.717
Gorai.003G149600
Gossypium raimondii
Gorai.003G149600
I
0.717
Lus10031285.g
Linum usitatissimum
Lus10031285.g
I
0.717
orange1.1g036782m.g
Citrus sinensis
orange1.1g036782m.g
I
0.717
Pavir.Ca01985
Panicum virgatum
Pavir.Ca01985
I
0.717
Pavir.J21476
Panicum virgatum
Pavir.J21476
I
0.717
Pavir.J22399
Panicum virgatum
Pavir.J22399
I
0.717
Bo3g024350
Brassica oleracea
Bo3g024350
I
0.707
Bra022780
Brassica rapa
Bra022780
I
0.707
GLYMA18G02780
Glycine max
GLYMA18G02780
I
0.707
GRMZM2G044150
Zea mays
GRMZM2G044150
I
0.707
GRMZM2G447176
Zea mays
GRMZM2G447176
I
0.707
GSMUA_Achr5G02190_001
Musa acuminata
GSMUA_Achr5G02190_001
I
0.707
GSMUA_Achr6G15660_001
Musa acuminata
GSMUA_Achr6G15660_001
I
0.707
GSMUA_Achr9G18030_001
Musa acuminata
GSMUA_Achr9G18030_001
I
0.707
OMERI01G39870
Oryza meridionalis
OMERI01G39870
I
0.707
ORUFI01G46340
Oryza rufipogon
ORUFI01G46340
I
0.707
POPTR_0009s08060
Populus trichocarpa
POPTR_0009s08060
I
0.707
SELMODRAFT_48883
Selaginella moellendorffii
SELMODRAFT_48883
I
0.707
SELMODRAFT_58936
Selaginella moellendorffii
SELMODRAFT_58936
I
0.707
Traes_4BS_E9E0C550B
Triticum aestivum
Traes_4BS_E9E0C550B
I
0.707
Traes_4DS_DA077BB06
Triticum aestivum
Traes_4DS_DA077BB06
I
0.707
TRIUR3_11841
Triticum urartu
TRIUR3_11841
I
0.707
Ca_13388
Cicer arietinum
Ca_13388
I
0.707
mgf019461m
Mimulus guttatus
mgf019461m
I
0.707
Gorai.004G234100
Gossypium raimondii
Gorai.004G234100
I
0.707
Gorai.011G290800
Gossypium raimondii
Gorai.011G290800
I
0.707
Lus10007525.g
Linum usitatissimum
Lus10007525.g
I
0.707
MDP0000155138
Malus domestica
MDP0000155138
I
0.707
MDP0000194766
Malus domestica
MDP0000194766
I
0.707
SapurV1A.0042s0120
Salix purpurea
SapurV1A.0042s0120
I
0.707
PDK_20s1728161g001
Phoenix dactylifera
PDK_20s1728161g001
I
0.707