CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Al_scaffold_0004_3226
(
Arabidopsis lyrata
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Al_scaffold_0004_3226
T244835_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.960
0.960
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG
CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.960
0.960
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.717
0.717
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.717
0.717
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.707
0.707
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.707
0.707
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Al_scaffold_0004_3226
LOB
17
116
PCGACKFLRRKCVKGCVFAPYFDADQGTARFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLCHEAMARLRDPVYGSVGHLFSLQHQVMNLQAELAHVQA
Links
Other
LOB
family TFs
Other
Arabidopsis lyrata
TFs
132 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.25993s0234
Boechera stricta
Bostr.25993s0234
I
0.970
LBD19
Arabidopsis thaliana
AT2G45410
D
0.960
Cagra.0698s0022
Capsella grandiflora
Cagra.0698s0022
I
0.960
Carubv10025477m.g
Capsella rubella
Carubv10025477m.g
I
0.960
Thhalv10001778m.g
Eutrema salsugineum
Thhalv10001778m.g
I
0.899
Bo4g024610
Brassica oleracea
Bo4g024610
I
0.889
Bra004908
Brassica rapa
Bra004908
I
0.879
Bra040312
Brassica rapa
Bra040312
I
0.869
GLYMA01G34523
Glycine max
GLYMA01G34523
I
0.838
evm.TU.supercontig_18.117
Carica papaya
evm.TU.supercontig_18.117
I
0.838
GLYMA03G02631
Glycine max
GLYMA03G02631
I
0.828
VIT_15s0048g00840
Vitis vinifera
VIT_15s0048g00840
I
0.828
PK25573.1
Cannabis sativa
PK25573.1
I
0.828
POPTR_0014s06580
Populus trichocarpa
POPTR_0014s06580
I
0.818
PRUPE_ppa017589mg
Prunus persica
PRUPE_ppa017589mg
I
0.818
Pm017935
Prunus mume
Pm017935
I
0.818
cassava28672.m1
Manihot esculenta
cassava28672.m1
I
0.818
Ciclev10022291m.g
Citrus clementina
Ciclev10022291m.g
I
0.818
Eucgr.E01415
Eucalyptus grandis
Eucgr.E01415
I
0.818
Gorai.007G091600
Gossypium raimondii
Gorai.007G091600
I
0.818
SapurV1A.0532s0200
Salix purpurea
SapurV1A.0532s0200
I
0.818
30174.m008897
Ricinus communis
30174.m008897
I
0.808
cassava40137.m1
Manihot esculenta
cassava40137.m1
I
0.808
gene19356-v1.0-hybrid
Fragaria vesca
gene19356-v1.0-hybrid
I
0.808
MDP0000429067
Malus domestica
MDP0000429067
I
0.808
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.798
MTR_8g036105
Medicago truncatula
MTR_8g036105
I
0.798
TCM_005497
Theobroma cacao
TCM_005497
I
0.798
Aquca_013_00580
Aquilegia coerulea
Aquca_013_00580
I
0.798
SapurV1A.0024s0790
Salix purpurea
SapurV1A.0024s0790
I
0.798
Ca_19598
Cicer arietinum
Ca_19598
I
0.788
mgf020735m
Mimulus guttatus
mgf020735m
I
0.788
Lus10009298.g
Linum usitatissimum
Lus10009298.g
I
0.788
LBD31
Arabidopsis thaliana
AT4G00210
I
0.778
MTR_7g075230
Medicago truncatula
MTR_7g075230
I
0.778
Bostr.14547s0030
Boechera stricta
Bostr.14547s0030
I
0.778
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.778
GRMZM2G110913
Zea mays
GRMZM2G110913
I
0.768
GRMZM2G150594
Zea mays
GRMZM2G150594
I
0.768
GSMUA_Achr2G11240_001
Musa acuminata
GSMUA_Achr2G11240_001
I
0.768
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.768
Sb01g041130
Sorghum bicolor
Sb01g041130
I
0.768
Solyc01g091420.1
Solanum lycopersicum
Solyc01g091420.1
I
0.768
Cla007069
Citrullus lanatus
Cla007069
I
0.768
30174.m008898
Ricinus communis
30174.m008898
I
0.768
cassava36912.valid.m1
Manihot esculenta
cassava36912.valid.m1
I
0.768
Cagra.1261s0013
Capsella grandiflora
Cagra.1261s0013
I
0.768
Ciclev10021992m.g
Citrus clementina
Ciclev10021992m.g
I
0.768
Gorai.004G161100
Gossypium raimondii
Gorai.004G161100
I
0.768
Gorai.008G114400
Gossypium raimondii
Gorai.008G114400
I
0.768
orange1.1g036534m.g
Citrus sinensis
orange1.1g036534m.g
I
0.768
Pavir.J34872
Panicum virgatum
Pavir.J34872
I
0.768
POPTR_0002s14980
Populus trichocarpa
POPTR_0002s14980
I
0.766
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.758
Bo4g195510
Brassica oleracea
Bo4g195510
I
0.758
BRADI1G68170
Brachypodium distachyon
BRADI1G68170
I
0.758
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.758
OBART03G10450
Oryza barthii
OBART03G10450
I
0.758
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.758
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.758
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.758
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.758
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.758
OS03G0246900
Oryza sativa
OS03G0246900
I
0.758
PRUPE_ppa010383mg
Prunus persica
PRUPE_ppa010383mg
I
0.758
LBD30
Vitis vinifera
VIT_15s0048g00830
I
0.758
Cla007068
Citrullus lanatus
Cla007068
I
0.758
Pm017936
Prunus mume
Pm017936
I
0.758
cassava28659.m1
Manihot esculenta
cassava28659.m1
I
0.758
Cucsa.362840
Cucumis sativus
Cucsa.362840
I
0.758
Carubv10002489m.g
Capsella rubella
Carubv10002489m.g
I
0.758
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.758
Gorai.008G114300
Gossypium raimondii
Gorai.008G114300
I
0.758
SapurV1A.0024s0780
Salix purpurea
SapurV1A.0024s0780
I
0.758
Thhalv10028924m.g
Eutrema salsugineum
Thhalv10028924m.g
I
0.758
GRMZM2G076327
Zea mays
GRMZM2G076327
I
0.747
GSMUA_Achr1G02520_001
Musa acuminata
GSMUA_Achr1G02520_001
I
0.747
GSMUA_AchrUn_randomG10470_001
Musa acuminata
GSMUA_AchrUn_randomG10470_001
I
0.747
MLOC_55239
Hordeum vulgare
MLOC_55239
I
0.747
Traes_4AS_5971FF832
Triticum aestivum
Traes_4AS_5971FF832
I
0.747
Traes_4BL_3FB579782
Triticum aestivum
Traes_4BL_3FB579782
I
0.747
Traes_4DL_A2012EA68
Triticum aestivum
Traes_4DL_A2012EA68
I
0.747
OB10G12360
Oryza brachyantha
OB10G12360
I
0.737
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.737
Pavir.Ia02614
Panicum virgatum
Pavir.Ia02614
I
0.737
Bo4g195520
Brassica oleracea
Bo4g195520
I
0.727
Bra040311
Brassica rapa
Bra040311
I
0.727
GLYMA01G34540
Glycine max
GLYMA01G34540
I
0.727
GLYMA03G02620
Glycine max
GLYMA03G02620
I
0.727
Solyc01g091400.2
Solanum lycopersicum
Solyc01g091400.2
I
0.727
Ca_20428
Cicer arietinum
Ca_20428
I
0.727
orange1.1g041368m.g
Citrus sinensis
orange1.1g041368m.g
I
0.727
LjSGA_002536.2
Lotus japonicus
LjSGA_002536.2
I
0.727
PGSC0003DMG402012772
Solanum tuberosum
PGSC0003DMG402012772
I
0.723
LBD18
Arabidopsis thaliana
AT2G45420
D
0.717
BGIOSGA032254
Oryza indica
BGIOSGA032254
I
0.717
Bo4g024620
Brassica oleracea
Bo4g024620
I
0.717
Bo9g002150
Brassica oleracea
Bo9g002150
I
0.717
Bo9g002160
Brassica oleracea
Bo9g002160
I
0.717
Bra037322
Brassica rapa
Bra037322
I
0.717
Bra037323
Brassica rapa
Bra037323
I
0.717
BRADI3G22510
Brachypodium distachyon
BRADI3G22510
I
0.717
LBD18
Arabidopsis lyrata
fgenesh2_kg.4__2737__AT2G45420.1
I
0.717
OGLUM10G03230
Oryza glumaepatula
OGLUM10G03230
I
0.717
ONIVA10G03250
Oryza nivara
ONIVA10G03250
I
0.717
OPUNC10G02630
Oryza punctata
OPUNC10G02630
I
0.717
ORGLA10G0025200
Oryza glaberrima
ORGLA10G0025200
I
0.717
ORUFI10G03180
Oryza rufipogon
ORUFI10G03180
I
0.717
OS10G0162600
Oryza sativa
OS10G0162600
I
0.717
Bostr.25993s0233
Boechera stricta
Bostr.25993s0233
I
0.717
Cagra.0698s0021
Capsella grandiflora
Cagra.0698s0021
I
0.717
Cagra.1261s0014
Capsella grandiflora
Cagra.1261s0014
I
0.717
Carubv10001875m.g
Capsella rubella
Carubv10001875m.g
I
0.717
Carubv10025050m.g
Capsella rubella
Carubv10025050m.g
I
0.717
gene19355-v1.0-hybrid
Fragaria vesca
gene19355-v1.0-hybrid
I
0.717
Pavir.Ib02517
Panicum virgatum
Pavir.Ib02517
I
0.717
Thhalv10001791m.g
Eutrema salsugineum
Thhalv10001791m.g
I
0.717
chr1.CM1255.40.nc
Lotus japonicus
chr1.CM1255.40.nc
I
0.717
chr3.LjT44N20.90.nd
Lotus japonicus
chr3.LjT44N20.90.nd
I
0.717
LBD30
Arabidopsis thaliana
AT4G00220
D
0.707
Bo2g097560
Brassica oleracea
Bo2g097560
I
0.707
Bra004910
Brassica rapa
Bra004910
I
0.707
Bra008514
Brassica rapa
Bra008514
I
0.707
LBD30
Arabidopsis lyrata
fgenesh2_kg.6__3680__AT4G00220.1
I
0.707
GSMUA_AchrUn_randomG23710_001
Musa acuminata
GSMUA_AchrUn_randomG23710_001
I
0.707
MTR_7g074990
Medicago truncatula
MTR_7g074990
I
0.707
LBD20
Vitis vinifera
VIT_08s0056g01650
I
0.707
Cla002965
Citrullus lanatus
Cla002965
I
0.707
gw1.261.12.1
Physcomitrella patens
gw1.261.12.1
I
0.707
Bostr.14547s0031
Boechera stricta
Bostr.14547s0031
I
0.707
Pavir.Ia03917
Panicum virgatum
Pavir.Ia03917
I
0.707
Thhalv10028937m.g
Eutrema salsugineum
Thhalv10028937m.g
I
0.707