AMTR_s00007p00227160 (Amborella trichopoda)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 AMTR_s00007p00227160 T244842_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.848 0.848
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.848 0.848
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN05416 LOB 18 116

Links

Other LOB family TFs
Other Amborella trichopoda TFs

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD4 Arabidopsis thaliana AT1G31320 D 0.707
LBD13 Arabidopsis thaliana AT2G30340 D 0.848
LBD12 Arabidopsis thaliana AT2G30130 I 0.717
LBD15 Arabidopsis thaliana AT2G40470 I 0.960
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.869
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.727
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.889
Bo3g024350 Brassica oleracea Bo3g024350 I 0.717
Bo3g034980 Brassica oleracea Bo3g034980 I 0.949
Bo4g012620 Brassica oleracea Bo4g012620 I 0.939
Bo4g059520 Brassica oleracea Bo4g059520 I 0.848
Bo4g059700 Brassica oleracea Bo4g059700 I 0.717
Bo4g170770 Brassica oleracea Bo4g170770 I 0.717
Bo4g172950 Brassica oleracea Bo4g172950 I 0.859
Bo4g190140 Brassica oleracea Bo4g190140 I 0.842
Bo4g190210 Brassica oleracea Bo4g190210 I 0.949
Bra000188 Brassica rapa Bra000188 I 0.949
Bra004572 Brassica rapa Bra004572 I 0.939
Bra016992 Brassica rapa Bra016992 I 0.929
Bra018320 Brassica rapa Bra018320 I 0.848
Bra018335 Brassica rapa Bra018335 I 0.717
Bra021612 Brassica rapa Bra021612 I 0.717
Bra021627 Brassica rapa Bra021627 I 0.859
Bra022780 Brassica rapa Bra022780 I 0.717
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.848
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.859
F775_25790 Aegilops tauschii F775_25790 I 0.869
F775_33210 Aegilops tauschii F775_33210 I 0.712
F775_52636 Aegilops tauschii F775_52636 I 0.869
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.707
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.859
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.960
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.717
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.909
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.970
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.970
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.929
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.727
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.727
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.859
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.717
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.859
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.919
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.889
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.869
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.889
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.869
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.707
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.869
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.869
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.869
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.707
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.707
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.929
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.707
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.889
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.717
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.909
OB01G44400 Oryza brachyantha OB01G44400 I 0.859
OB05G14280 Oryza brachyantha OB05G14280 I 0.908
OBART01G35680 Oryza barthii OBART01G35680 I 0.869
OBART05G04570 Oryza barthii OBART05G04570 I 0.889
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.869
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.727
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.889
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.869
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.768
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.869
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.727
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.889
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.869
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.727
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.889
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.859
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.707
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.869
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.889
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.869
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.727
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.889
OS01G0825000 Oryza sativa OS01G0825000 I 0.869
OS05G0165450 Oryza sativa OS05G0165450 I 0.889
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.727
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.889
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.707
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.929
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.717
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.879
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.717
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.707
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.707
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.717
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.949
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.869
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.879
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.970
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.717
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.707
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.717
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.869
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.737
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.859
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.730
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.869
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.848
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.848
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.727
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.707
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.707
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.727
Si004575m.g Setaria italica Si004575m.g I 0.869
Si012018m.g Setaria italica Si012018m.g I 0.879
Si026864m.g Setaria italica Si026864m.g I 0.737
Si037583m.g Setaria italica Si037583m.g I 0.737
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.899
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.929
Solyc06g050950.2 Solanum lycopersicum Solyc06g050950.2 I 0.707
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.717
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.889
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.727
TCM_032557 Theobroma cacao TCM_032557 I 0.727
TCM_042262 Theobroma cacao TCM_042262 I 0.909
TCM_042447 Theobroma cacao TCM_042447 I 0.717
TCM_045438 Theobroma cacao TCM_045438 I 0.980
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.869
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.869
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.869
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.859
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.890
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.869
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.879
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.980
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.737
Ca_04126 Cicer arietinum Ca_04126 I 0.960
Ca_06548 Cicer arietinum Ca_06548 I 0.707
Ca_08998 Cicer arietinum Ca_08998 I 0.707
Ca_12420 Cicer arietinum Ca_12420 I 0.909
Ca_12450 Cicer arietinum Ca_12450 I 0.717
Ca_13575 Cicer arietinum Ca_13575 I 0.707
Ca_15642 Cicer arietinum Ca_15642 I 0.879
Cla006731 Citrullus lanatus Cla006731 I 0.745
Cla007391 Citrullus lanatus Cla007391 I 0.949
Cla013678 Citrullus lanatus Cla013678 I 0.737
Pm000277 Prunus mume Pm000277 I 0.859
Pm011040 Prunus mume Pm011040 I 0.717
Pm018982 Prunus mume Pm018982 I 0.707
29729.m002278 Ricinus communis 29729.m002278 I 0.707
29729.m002335 Ricinus communis 29729.m002335 I 0.960
29957.m001411 Ricinus communis 29957.m001411 I 0.889
30169.m006340 Ricinus communis 30169.m006340 I 0.727
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.980
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.727
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.980
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.717
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.869
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.737
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.949
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.717
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.879
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.889
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.889
mgf011471m Mimulus guttatus mgf011471m I 0.919
mgf018189m Mimulus guttatus mgf018189m I 0.707
mgf020556m Mimulus guttatus mgf020556m I 0.889
mgf026046m Mimulus guttatus mgf026046m I 0.737
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.960
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.707
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.707
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.707
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.960
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.848
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.707
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.848
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.707
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.960
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.707
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.960
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.838
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.717
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.869
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.737
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.919
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.717
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.879
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.707
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.960
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.707
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.980
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.919
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.707
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.707
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.707
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.960
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.899
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.737
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.717
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.707
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.909
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.980
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.717
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.707
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.949
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.949
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.909
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.707
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.909
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.818
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.717
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.717
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.707
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.707
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.828
MDP0000121203 Malus domestica MDP0000121203 I 0.707
MDP0000155138 Malus domestica MDP0000155138 I 0.717
MDP0000167580 Malus domestica MDP0000167580 I 0.900
MDP0000268890 Malus domestica MDP0000268890 I 0.717
MDP0000278334 Malus domestica MDP0000278334 I 0.949
MDP0000284409 Malus domestica MDP0000284409 I 0.717
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.919
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.869
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.717
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.737
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.859
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.848
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.869
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.737
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.737
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.869
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.747
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.747
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.747
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.707
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.707
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.747
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.879
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.869
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.707
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.707
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.707
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.848
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.949
PK03716.1 Cannabis sativa PK03716.1 I 0.853
PK11564.1 Cannabis sativa PK11564.1 I 0.727
PK17019.1 Cannabis sativa PK17019.1 I 0.735
PK17217.1 Cannabis sativa PK17217.1 I 0.990
PK21617.1 Cannabis sativa PK21617.1 I 0.913
PK24688.1 Cannabis sativa PK24688.1 I 0.707
PK29334.1 Cannabis sativa PK29334.1 I 0.719
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.949
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.939
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.707
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.922
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.828
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.763
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.797