CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LBD31
(
Arabidopsis thaliana
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
AT4G00210
T244898_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.768
0.768
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG
CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.768
0.768
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.717
0.717
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.717
0.717
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G00210.1
LOB
11
110
PCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQT
Links
Other
LOB
family TFs
Other
Arabidopsis thaliana
TFs
145 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.14547s0030
Boechera stricta
Bostr.14547s0030
I
0.939
Cagra.1261s0013
Capsella grandiflora
Cagra.1261s0013
I
0.929
Carubv10002489m.g
Capsella rubella
Carubv10002489m.g
I
0.919
Thhalv10028924m.g
Eutrema salsugineum
Thhalv10028924m.g
I
0.889
LBD31
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002970
N
0.838
Bo9g002150
Brassica oleracea
Bo9g002150
I
0.828
Bra037322
Brassica rapa
Bra037322
I
0.828
GLYMA01G34523
Glycine max
GLYMA01G34523
I
0.828
Eucgr.E01415
Eucalyptus grandis
Eucgr.E01415
I
0.828
GLYMA03G02631
Glycine max
GLYMA03G02631
I
0.818
MTR_8g036105
Medicago truncatula
MTR_8g036105
I
0.818
evm.TU.supercontig_18.117
Carica papaya
evm.TU.supercontig_18.117
I
0.818
VIT_15s0048g00840
Vitis vinifera
VIT_15s0048g00840
I
0.808
Ca_19598
Cicer arietinum
Ca_19598
I
0.808
SapurV1A.0024s0790
Salix purpurea
SapurV1A.0024s0790
I
0.808
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.798
gene19356-v1.0-hybrid
Fragaria vesca
gene19356-v1.0-hybrid
I
0.798
PK25573.1
Cannabis sativa
PK25573.1
I
0.798
chr3.LjT44N20.90.nd
Lotus japonicus
chr3.LjT44N20.90.nd
I
0.791
POPTR_0014s06580
Populus trichocarpa
POPTR_0014s06580
I
0.788
PRUPE_ppa017589mg
Prunus persica
PRUPE_ppa017589mg
I
0.788
TCM_005497
Theobroma cacao
TCM_005497
I
0.788
mgf020735m
Mimulus guttatus
mgf020735m
I
0.788
Lus10009298.g
Linum usitatissimum
Lus10009298.g
I
0.788
MDP0000429067
Malus domestica
MDP0000429067
I
0.788
SapurV1A.0532s0200
Salix purpurea
SapurV1A.0532s0200
I
0.788
Thhalv10001778m.g
Eutrema salsugineum
Thhalv10001778m.g
I
0.788
Al_scaffold_0004_3226
Arabidopsis lyrata
Al_scaffold_0004_3226
I
0.778
BRADI1G68170
Brachypodium distachyon
BRADI1G68170
I
0.778
MLOC_55239
Hordeum vulgare
MLOC_55239
I
0.778
Traes_4AS_5971FF832
Triticum aestivum
Traes_4AS_5971FF832
I
0.778
Traes_4DL_A2012EA68
Triticum aestivum
Traes_4DL_A2012EA68
I
0.778
Pm017935
Prunus mume
Pm017935
I
0.778
cassava28672.m1
Manihot esculenta
cassava28672.m1
I
0.778
cassava40137.m1
Manihot esculenta
cassava40137.m1
I
0.778
Bostr.25993s0234
Boechera stricta
Bostr.25993s0234
I
0.778
Ciclev10022291m.g
Citrus clementina
Ciclev10022291m.g
I
0.778
Ca_20429
Cicer arietinum
Ca_20429
I
0.775
LBD19
Arabidopsis thaliana
AT2G45410
D
0.768
GRMZM2G110913
Zea mays
GRMZM2G110913
I
0.768
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.768
MTR_7g075230
Medicago truncatula
MTR_7g075230
I
0.768
Sb01g041130
Sorghum bicolor
Sb01g041130
I
0.768
Traes_4BL_3FB579782
Triticum aestivum
Traes_4BL_3FB579782
I
0.768
30174.m008897
Ricinus communis
30174.m008897
I
0.768
Cagra.0698s0022
Capsella grandiflora
Cagra.0698s0022
I
0.768
Carubv10025477m.g
Capsella rubella
Carubv10025477m.g
I
0.768
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.768
Gorai.008G114300
Gossypium raimondii
Gorai.008G114300
I
0.768
Pavir.J34872
Panicum virgatum
Pavir.J34872
I
0.768
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.758
BGIOSGA032254
Oryza indica
BGIOSGA032254
I
0.758
GLYMA01G34540
Glycine max
GLYMA01G34540
I
0.758
GRMZM2G150594
Zea mays
GRMZM2G150594
I
0.758
GSMUA_Achr1G02520_001
Musa acuminata
GSMUA_Achr1G02520_001
I
0.758
GSMUA_Achr2G11240_001
Musa acuminata
GSMUA_Achr2G11240_001
I
0.758
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.758
MTR_7g074990
Medicago truncatula
MTR_7g074990
I
0.758
OB10G12360
Oryza brachyantha
OB10G12360
I
0.758
OBART03G10450
Oryza barthii
OBART03G10450
I
0.758
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.758
OGLUM10G03230
Oryza glumaepatula
OGLUM10G03230
I
0.758
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.758
ONIVA10G03250
Oryza nivara
ONIVA10G03250
I
0.758
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.758
OPUNC10G02630
Oryza punctata
OPUNC10G02630
I
0.758
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.758
ORGLA10G0025200
Oryza glaberrima
ORGLA10G0025200
I
0.758
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.758
ORUFI10G03180
Oryza rufipogon
ORUFI10G03180
I
0.758
OS03G0246900
Oryza sativa
OS03G0246900
I
0.758
OS10G0162600
Oryza sativa
OS10G0162600
I
0.758
Solyc01g091420.1
Solanum lycopersicum
Solyc01g091420.1
I
0.758
LBD30
Vitis vinifera
VIT_15s0048g00830
I
0.758
Cla007069
Citrullus lanatus
Cla007069
I
0.758
30174.m008898
Ricinus communis
30174.m008898
I
0.758
cassava28659.m1
Manihot esculenta
cassava28659.m1
I
0.758
cassava36912.valid.m1
Manihot esculenta
cassava36912.valid.m1
I
0.758
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.758
Aquca_013_00580
Aquilegia coerulea
Aquca_013_00580
I
0.758
Ciclev10021992m.g
Citrus clementina
Ciclev10021992m.g
I
0.758
Gorai.007G091600
Gossypium raimondii
Gorai.007G091600
I
0.758
orange1.1g036534m.g
Citrus sinensis
orange1.1g036534m.g
I
0.758
orange1.1g041368m.g
Citrus sinensis
orange1.1g041368m.g
I
0.758
PGSC0003DMG400012757
Solanum tuberosum
PGSC0003DMG400012757
I
0.753
Bo4g024610
Brassica oleracea
Bo4g024610
I
0.747
Bra040312
Brassica rapa
Bra040312
I
0.747
GLYMA03G02620
Glycine max
GLYMA03G02620
I
0.747
PRUPE_ppa010383mg
Prunus persica
PRUPE_ppa010383mg
I
0.747
Ca_20428
Cicer arietinum
Ca_20428
I
0.747
Cla007068
Citrullus lanatus
Cla007068
I
0.747
Pm017936
Prunus mume
Pm017936
I
0.747
Cucsa.362840
Cucumis sativus
Cucsa.362840
I
0.747
Gorai.004G161100
Gossypium raimondii
Gorai.004G161100
I
0.747
Gorai.008G114400
Gossypium raimondii
Gorai.008G114400
I
0.747
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.747
OLONG_001985
Oryza longistaminata
OLONG_001985
I
0.744
Bra004908
Brassica rapa
Bra004908
I
0.737
GSMUA_AchrUn_randomG10470_001
Musa acuminata
GSMUA_AchrUn_randomG10470_001
I
0.737
PGSC0003DMG400022454
Solanum tuberosum
PGSC0003DMG400022454
I
0.737
SapurV1A.0024s0780
Salix purpurea
SapurV1A.0024s0780
I
0.737
POPTR_0002s14980
Populus trichocarpa
POPTR_0002s14980
I
0.734
Bo4g195510
Brassica oleracea
Bo4g195510
I
0.730
MDP0000254224
Malus domestica
MDP0000254224
I
0.728
Bo4g195520
Brassica oleracea
Bo4g195520
I
0.727
Bra040311
Brassica rapa
Bra040311
I
0.727
GRMZM2G076327
Zea mays
GRMZM2G076327
I
0.727
Solyc01g098220.1
Solanum lycopersicum
Solyc01g098220.1
I
0.727
gw1.157.74.1
Physcomitrella patens
gw1.157.74.1
I
0.727
gene19355-v1.0-hybrid
Fragaria vesca
gene19355-v1.0-hybrid
I
0.727
Pavir.Ia02614
Panicum virgatum
Pavir.Ia02614
I
0.727
chr1.CM1255.40.nc
Lotus japonicus
chr1.CM1255.40.nc
I
0.727
PGSC0003DMG402012772
Solanum tuberosum
PGSC0003DMG402012772
I
0.723
LBD18
Arabidopsis thaliana
AT2G45420
D
0.717
Bo4g024620
Brassica oleracea
Bo4g024620
I
0.717
Bra004910
Brassica rapa
Bra004910
I
0.717
LBD18
Arabidopsis lyrata
fgenesh2_kg.4__2737__AT2G45420.1
I
0.717
GLYMA09G40500
Glycine max
GLYMA09G40500
I
0.717
GLYMA18G45320
Glycine max
GLYMA18G45320
I
0.717
TCM_005496
Theobroma cacao
TCM_005496
I
0.717
Cla002965
Citrullus lanatus
Cla002965
I
0.717
mgf006429m
Mimulus guttatus
mgf006429m
I
0.717
Bostr.25993s0233
Boechera stricta
Bostr.25993s0233
I
0.717
Cagra.0698s0021
Capsella grandiflora
Cagra.0698s0021
I
0.717
Carubv10025050m.g
Capsella rubella
Carubv10025050m.g
I
0.717
Pavir.Ib02517
Panicum virgatum
Pavir.Ib02517
I
0.717
Thhalv10001791m.g
Eutrema salsugineum
Thhalv10001791m.g
I
0.717
LjSGA_002536.2
Lotus japonicus
LjSGA_002536.2
I
0.717
MLOC_61947
Hordeum vulgare
MLOC_61947
I
0.711
MLOC_52276
Hordeum vulgare
MLOC_52276
I
0.709
BRADI3G22510
Brachypodium distachyon
BRADI3G22510
I
0.707
LPERR02G31040
Leersia perrieri
LPERR02G31040
I
0.707
MTR_8g036085
Medicago truncatula
MTR_8g036085
I
0.707
PRUPE_ppa024802mg
Prunus persica
PRUPE_ppa024802mg
I
0.707
Solyc01g091400.2
Solanum lycopersicum
Solyc01g091400.2
I
0.707
LBD20
Vitis vinifera
VIT_08s0056g01650
I
0.707
Pm028642
Prunus mume
Pm028642
I
0.707
Cucsa.338130
Cucumis sativus
Cucsa.338130
I
0.707
gw1.35.169.1
Physcomitrella patens
gw1.35.169.1
I
0.707
gw1.61.81.1
Physcomitrella patens
gw1.61.81.1
I
0.707
Aquca_034_00400
Aquilegia coerulea
Aquca_034_00400
I
0.707
MDP0000322059
Malus domestica
MDP0000322059
I
0.707
Pavir.Ia03917
Panicum virgatum
Pavir.Ia03917
I
0.707
gw1.190.59.1
Physcomitrella patens
gw1.190.59.1
I
0.705
gw1.42.84.1
Physcomitrella patens
gw1.42.84.1
I
0.701