CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo3g036030
(
Brassica oleracea
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Bo3g036030
T244969_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.939
0.939
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.939
0.939
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.939
0.939
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.737
0.737
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.737
0.737
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.727
0.727
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.727
0.727
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo3g036030.1
LOB
15
114
PCGACKFLRRKCLSDCIFAPYFSSEQGAERFAAIHKVFGASNVSKLLLKVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFSLQQQVAYLQAQVMQMKA
Links
Other
LOB
family TFs
Other
Brassica oleracea
TFs
319 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CGI_10006980
Crassostrea gigas
CGI_10006980
I
GL50803_17540
Giardia lamblia
GL50803_17540
I
ISCW014189
Ixodes scapularis
ISCW014189
I
LotgiG131492
Lottia gigantea
LotgiG131492
I
SMAR003184
Strigamia maritima
SMAR003184
I
SMAR006121
Strigamia maritima
SMAR006121
I
SPU_023530
Strongylocentrotus purpuratus
SPU_023530
I
Ocbimv22032810m.g
Octopus bimaculoides
Ocbimv22032810m.g
I
Sakowv30017861m.g
Saccoglossus kowalevskii
Sakowv30017861m.g
I
fgenesh2_pg.C_Chr_07000337
Micromonas sp RCC299
fgenesh2_pg.C_Chr_07000337
I
LDEC011073
Leptinotarsa decemlineata
LDEC011073
I
SNAPOd2T00006471001
Oikopleura dioica
SNAPOd2T00006471001
I
BGLB000541
Biomphalaria glabrata
BGLB000541
I
ECANG7_06547
Echinococcus canadensis
ECANG7_06547
I
EmuJ_001157200
Echinococcus multilocularis
EmuJ_001157200
I
HDID_0000342501
Hymenolepis diminuta
HDID_0000342501
I
HmN_000451100
Hymenolepis microstoma
HmN_000451100
I
HNAJ_0000082601
Hymenolepis nana
HNAJ_0000082601
I
MCOS_0000539101
Mesocestoides corti
MCOS_0000539101
I
SSLN_0000405401
Schistocephalus solidus
SSLN_0000405401
I
TsM_000529300
Taenia solium
TsM_000529300
I
TTAC_0000915101
Hydatigera taeniaeformis
TTAC_0000915101
I
CpipJ_CPIJ010152
Culex pipiens
CpipJ_CPIJ010152
N
WUBG_00477
Wuchereria bancrofti
WUBG_00477
N
AAEL017280
Aedes aegypti
AAEL017280
N
ACEP26642
Atta cephalotes
ACEP26642
N
ACYPI006497
Acyrthosiphon pisum
ACYPI006497
N
ADAC008556
Anopheles darlingi
ADAC008556
N
AGAP001786
Anopheles gambiae
AGAP001786
N
BGIBMGA010273
Bombyx mori
BGIBMGA010273
N
Bm1891
Brugia malayi
Bm1891
N
CJA11729
Caenorhabditis japonica
CJA11729
N
CPIJ010152
Culex quinquefasciatus
CPIJ010152
N
DAPPUDRAFT_327651
Daphnia pulex
DAPPUDRAFT_327651
N
osa
Drosophila yakuba
FBgn0041640
N
GF23141
Drosophila ananassae
FBgn0100135
N
GG16758
Drosophila erecta
FBgn0108988
N
GH15872
Drosophila grimshawi
FBgn0123343
N
GI23637
Drosophila mojavensis
FBgn0146363
N
GM15347
Drosophila sechellia
FBgn0170267
N
GK22507
Drosophila willistoni
FBgn0224484
N
GA26236
Drosophila pseudoobscura
FBgn0247610
N
osa
Drosophila melanogaster
FBgn0261885
N
fgenesh1_pg.1__154
Bigelowiella natans
fgenesh1_pg.1__154
N
GB44899
Apis mellifera
GB44899
N
HMEL002206
Heliconius melpomene
HMEL002206
N
KGM_12579
Danaus plexippus
KGM_12579
N
maker-pag1_scaffold_15-fgenesh-gene-1.10
Pythium aphanidermatum
maker-pag1_scaffold_15-fgenesh-gene-1.10
N
ML16136a
Mnemiopsis leidyi
ML16136a
N
NV21537
Nasonia vitripennis
NV21537
N
PHUM080380
Pediculus humanus
PHUM080380
N
PPA05721
Pristionchus pacificus
PPA05721
N
RPRC005301
Rhodnius prolixus
RPRC005301
N
SINV22763
Solenopsis invicta
SINV22763
N
Smp_156170
Schistosoma mansoni
Smp_156170
N
TC013586
Tribolium castaneum
TC013586
N
tetur02g14160
Tetranychus urticae
tetur02g14160
N
tetur02g14180
Tetranychus urticae
tetur02g14180
N
WBGene00237224
Onchocerca volvulus
WBGene00237224
N
YQE_09239
Dendroctonus ponderosae
YQE_09239
N
Cflo_01219--XP_395512.3_APIME
Camponotus floridanus
Cflo_01219--XP_395512.3_APIME
N
Hsal_01939--XP_395512.3_APIME
Harpegnathos saltator
Hsal_01939--XP_395512.3_APIME
N
CLEC012210
Cimex lectularius
CLEC012210
N
HHAL005964-PA
Halyomorpha halys
HHAL005964-PA
N
LCUP015823
Lucilia cuprina
LCUP015823
N
Sjc_0060650
Schistosoma japonicum
Sjc_0060650
N
SMU15017366
Schmidtea mediterranea
SMU15017366
N
SMU15033702
Schmidtea mediterranea
SMU15033702
N
AALB003072
Anopheles albimanus
AALB003072
N
AARA000452
Anopheles arabiensis
AARA000452
N
AATE006796
Anopheles atroparvus
AATE006796
N
ACHR005336
Anopheles christyi
ACHR005336
N
ACUA025715
Anopheles culicifacies
ACUA025715
N
ADIR002498
Anopheles dirus
ADIR002498
N
AEPI003661
Anopheles epiroticus
AEPI003661
N
AFAF010393
Anopheles farauti
AFAF010393
N
AFUN009891
Anopheles funestus
AFUN009891
N
AMAM004700
Anopheles maculatus
AMAM004700
N
AMEC021754
Anopheles melas
AMEC021754
N
AMEM013442
Anopheles merus
AMEM013442
N
AMIN000696
Anopheles minimus
AMIN000696
N
AQUA004105
Anopheles quadriannulatus
AQUA004105
N
ASTEI11512
Anopheles stephensi
ASTEI11512
N
LLOJ000864
Lutzomyia longipalpis
LLOJ000864
N
MDOA004559
Musca domestica
MDOA004559
N
PPAI002183
Phlebotomus papatasi
PPAI002183
N
A_08377
Schistosoma haematobium
A_08377
N
ANCCAN_09492
Ancylostoma caninum
ANCCAN_09492
N
ANCCEY_03110
Ancylostoma ceylanicum
ANCCEY_03110
N
ANCDUO_04788
Ancylostoma duodenale
ANCDUO_04788
N
BTMF_0001195401
Brugia timori
BTMF_0001195401
N
csin104729
Clonorchis sinensis
csin104729
N
D915_06741
Fasciola hepatica
D915_06741
N
DME_0001005001
Dracunculus medinensis
DME_0001005001
N
EEL_0001008901
Elaeophora elaphi
EEL_0001008901
N
EVEC_0000024601
Enterobius vermicularis
EVEC_0000024601
N
GPUH_0000112301
Gongylonema pulchrum
GPUH_0000112301
N
HCOI00324200
Haemonchus contortus
HCOI00324200
N
HPBE_0000983501
Heligmosomoides bakeri
HPBE_0000983501
N
HPLM_0000291901
Haemonchus placei
HPLM_0000291901
N
L893_g29191
Steinernema glaseri
L893_g29191
N
nAv.1.0.1.g00338
Acanthocheilonema viteae
nAv.1.0.1.g00338
N
NBR_0002081701
Nippostrongylus brasiliensis
NBR_0002081701
N
nDi.2.2.2.g04479
Dirofilaria immitis
nDi.2.2.2.g04479
N
NECAME_01002
Necator americanus
NECAME_01002
N
nLs.2.1.2.g09434
Litomosoides sigmodontis
nLs.2.1.2.g09434
N
nOo.2.0.1.g08403
Onchocerca ochengi
nOo.2.0.1.g08403
N
OESDEN_04600
Oesophagostomum dentatum
OESDEN_04600
N
OFLC_0001383401
Onchocerca flexuosa
OFLC_0001383401
N
PEQ_0000742201
Parascaris equorum
PEQ_0000742201
N
PTRK_0001699800
Parastrongyloides trichosuri
PTRK_0001699800
N
PXEA_0000852601
Protopolystoma xenopodis
PXEA_0000852601
N
SBAD_0000668001
Soboliphyme baturini
SBAD_0000668001
N
scaffold2015-EXSNAP2012.2
Pristionchus exspectatus
scaffold2015-EXSNAP2012.2
N
SCUD_0001703701
Schistosoma curassoni
SCUD_0001703701
N
SMTD_0000055001
Schistosoma mattheei
SMTD_0000055001
N
SPAL_0001124500
Strongyloides papillosus
SPAL_0001124500
N
SSTP_0000977600
Strongyloides stercoralis
SSTP_0000977600
N
SVE_1830100
Strongyloides venezuelensis
SVE_1830100
N
T265_07301
Opisthorchis viverrini
T265_07301
N
TCLT_0000619901
Thelazia callipaeda
TCLT_0000619901
N
TCNE_0000128301
Toxocara canis
TCNE_0000128301
N
TELCIR_03263
Teladorsagia circumcincta
TELCIR_03263
N