Bo3g036030 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo3g036030 T244969_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.939 0.939
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.939 0.939
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.939 0.939
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.737 0.737
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.737 0.737
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.727 0.727
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g036030.1 LOB 15 114

Links

Other LOB family TFs
Other Brassica oleracea TFs

319 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CGI_10006980 Crassostrea gigas CGI_10006980 I
GL50803_17540 Giardia lamblia GL50803_17540 I
ISCW014189 Ixodes scapularis ISCW014189 I
LotgiG131492 Lottia gigantea LotgiG131492 I
SMAR003184 Strigamia maritima SMAR003184 I
SMAR006121 Strigamia maritima SMAR006121 I
SPU_023530 Strongylocentrotus purpuratus SPU_023530 I
Ocbimv22032810m.g Octopus bimaculoides Ocbimv22032810m.g I
Sakowv30017861m.g Saccoglossus kowalevskii Sakowv30017861m.g I
fgenesh2_pg.C_Chr_07000337 Micromonas sp RCC299 fgenesh2_pg.C_Chr_07000337 I
LDEC011073 Leptinotarsa decemlineata LDEC011073 I
SNAPOd2T00006471001 Oikopleura dioica SNAPOd2T00006471001 I
BGLB000541 Biomphalaria glabrata BGLB000541 I
ECANG7_06547 Echinococcus canadensis ECANG7_06547 I
EmuJ_001157200 Echinococcus multilocularis EmuJ_001157200 I
HDID_0000342501 Hymenolepis diminuta HDID_0000342501 I
HmN_000451100 Hymenolepis microstoma HmN_000451100 I
HNAJ_0000082601 Hymenolepis nana HNAJ_0000082601 I
MCOS_0000539101 Mesocestoides corti MCOS_0000539101 I
SSLN_0000405401 Schistocephalus solidus SSLN_0000405401 I
TsM_000529300 Taenia solium TsM_000529300 I
TTAC_0000915101 Hydatigera taeniaeformis TTAC_0000915101 I
CpipJ_CPIJ010152 Culex pipiens CpipJ_CPIJ010152 N
WUBG_00477 Wuchereria bancrofti WUBG_00477 N
AAEL017280 Aedes aegypti AAEL017280 N
ACEP26642 Atta cephalotes ACEP26642 N
ACYPI006497 Acyrthosiphon pisum ACYPI006497 N
ADAC008556 Anopheles darlingi ADAC008556 N
AGAP001786 Anopheles gambiae AGAP001786 N
BGIBMGA010273 Bombyx mori BGIBMGA010273 N
Bm1891 Brugia malayi Bm1891 N
CJA11729 Caenorhabditis japonica CJA11729 N
CPIJ010152 Culex quinquefasciatus CPIJ010152 N
DAPPUDRAFT_327651 Daphnia pulex DAPPUDRAFT_327651 N
osa Drosophila yakuba FBgn0041640 N
GF23141 Drosophila ananassae FBgn0100135 N
GG16758 Drosophila erecta FBgn0108988 N
GH15872 Drosophila grimshawi FBgn0123343 N
GI23637 Drosophila mojavensis FBgn0146363 N
GM15347 Drosophila sechellia FBgn0170267 N
GK22507 Drosophila willistoni FBgn0224484 N
GA26236 Drosophila pseudoobscura FBgn0247610 N
osa Drosophila melanogaster FBgn0261885 N
fgenesh1_pg.1__154 Bigelowiella natans fgenesh1_pg.1__154 N
GB44899 Apis mellifera GB44899 N
HMEL002206 Heliconius melpomene HMEL002206 N
KGM_12579 Danaus plexippus KGM_12579 N
maker-pag1_scaffold_15-fgenesh-gene-1.10 Pythium aphanidermatum maker-pag1_scaffold_15-fgenesh-gene-1.10 N
ML16136a Mnemiopsis leidyi ML16136a N
NV21537 Nasonia vitripennis NV21537 N
PHUM080380 Pediculus humanus PHUM080380 N
PPA05721 Pristionchus pacificus PPA05721 N
RPRC005301 Rhodnius prolixus RPRC005301 N
SINV22763 Solenopsis invicta SINV22763 N
Smp_156170 Schistosoma mansoni Smp_156170 N
TC013586 Tribolium castaneum TC013586 N
tetur02g14160 Tetranychus urticae tetur02g14160 N
tetur02g14180 Tetranychus urticae tetur02g14180 N
WBGene00237224 Onchocerca volvulus WBGene00237224 N
YQE_09239 Dendroctonus ponderosae YQE_09239 N
Cflo_01219--XP_395512.3_APIME Camponotus floridanus Cflo_01219--XP_395512.3_APIME N
Hsal_01939--XP_395512.3_APIME Harpegnathos saltator Hsal_01939--XP_395512.3_APIME N
CLEC012210 Cimex lectularius CLEC012210 N
HHAL005964-PA Halyomorpha halys HHAL005964-PA N
LCUP015823 Lucilia cuprina LCUP015823 N
Sjc_0060650 Schistosoma japonicum Sjc_0060650 N
SMU15017366 Schmidtea mediterranea SMU15017366 N
SMU15033702 Schmidtea mediterranea SMU15033702 N
AALB003072 Anopheles albimanus AALB003072 N
AARA000452 Anopheles arabiensis AARA000452 N
AATE006796 Anopheles atroparvus AATE006796 N
ACHR005336 Anopheles christyi ACHR005336 N
ACUA025715 Anopheles culicifacies ACUA025715 N
ADIR002498 Anopheles dirus ADIR002498 N
AEPI003661 Anopheles epiroticus AEPI003661 N
AFAF010393 Anopheles farauti AFAF010393 N
AFUN009891 Anopheles funestus AFUN009891 N
AMAM004700 Anopheles maculatus AMAM004700 N
AMEC021754 Anopheles melas AMEC021754 N
AMEM013442 Anopheles merus AMEM013442 N
AMIN000696 Anopheles minimus AMIN000696 N
AQUA004105 Anopheles quadriannulatus AQUA004105 N
ASTEI11512 Anopheles stephensi ASTEI11512 N
LLOJ000864 Lutzomyia longipalpis LLOJ000864 N
MDOA004559 Musca domestica MDOA004559 N
PPAI002183 Phlebotomus papatasi PPAI002183 N
A_08377 Schistosoma haematobium A_08377 N
ANCCAN_09492 Ancylostoma caninum ANCCAN_09492 N
ANCCEY_03110 Ancylostoma ceylanicum ANCCEY_03110 N
ANCDUO_04788 Ancylostoma duodenale ANCDUO_04788 N
BTMF_0001195401 Brugia timori BTMF_0001195401 N
csin104729 Clonorchis sinensis csin104729 N
D915_06741 Fasciola hepatica D915_06741 N
DME_0001005001 Dracunculus medinensis DME_0001005001 N
EEL_0001008901 Elaeophora elaphi EEL_0001008901 N
EVEC_0000024601 Enterobius vermicularis EVEC_0000024601 N
GPUH_0000112301 Gongylonema pulchrum GPUH_0000112301 N
HCOI00324200 Haemonchus contortus HCOI00324200 N
HPBE_0000983501 Heligmosomoides bakeri HPBE_0000983501 N
HPLM_0000291901 Haemonchus placei HPLM_0000291901 N
L893_g29191 Steinernema glaseri L893_g29191 N
nAv.1.0.1.g00338 Acanthocheilonema viteae nAv.1.0.1.g00338 N
NBR_0002081701 Nippostrongylus brasiliensis NBR_0002081701 N
nDi.2.2.2.g04479 Dirofilaria immitis nDi.2.2.2.g04479 N
NECAME_01002 Necator americanus NECAME_01002 N
nLs.2.1.2.g09434 Litomosoides sigmodontis nLs.2.1.2.g09434 N
nOo.2.0.1.g08403 Onchocerca ochengi nOo.2.0.1.g08403 N
OESDEN_04600 Oesophagostomum dentatum OESDEN_04600 N
OFLC_0001383401 Onchocerca flexuosa OFLC_0001383401 N
PEQ_0000742201 Parascaris equorum PEQ_0000742201 N
PTRK_0001699800 Parastrongyloides trichosuri PTRK_0001699800 N
PXEA_0000852601 Protopolystoma xenopodis PXEA_0000852601 N
SBAD_0000668001 Soboliphyme baturini SBAD_0000668001 N
scaffold2015-EXSNAP2012.2 Pristionchus exspectatus scaffold2015-EXSNAP2012.2 N
SCUD_0001703701 Schistosoma curassoni SCUD_0001703701 N
SMTD_0000055001 Schistosoma mattheei SMTD_0000055001 N
SPAL_0001124500 Strongyloides papillosus SPAL_0001124500 N
SSTP_0000977600 Strongyloides stercoralis SSTP_0000977600 N
SVE_1830100 Strongyloides venezuelensis SVE_1830100 N
T265_07301 Opisthorchis viverrini T265_07301 N
TCLT_0000619901 Thelazia callipaeda TCLT_0000619901 N
TCNE_0000128301 Toxocara canis TCNE_0000128301 N
TELCIR_03263 Teladorsagia circumcincta TELCIR_03263 N