Bra016876 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra016876 T245048_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016876.1-P LOB 7 106

Links

Other LOB family TFs
Other Brassica rapa TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo4g191540 Brassica oleracea Bo4g191540 N 0.960
Bo8g092560 Brassica oleracea Bo8g092560 I 0.909
Thhalv10017903m.g Eutrema salsugineum Thhalv10017903m.g N 0.909
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.899
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.899
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.899
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.899
LBD17 Arabidopsis thaliana AT2G42440 N 0.889
LBD29 Arabidopsis thaliana AT3G58190 I 0.889
Bostr.25993s0537 Boechera stricta Bostr.25993s0537 I 0.889
Bo4g108600 Brassica oleracea Bo4g108600 I 0.879
Bra007385 Brassica rapa Bra007385 N 0.879
Bra014581 Brassica rapa Bra014581 I 0.879
fgenesh1_pg.C_scaffold_4002383 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002383 N 0.879
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.879
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.838
OB08G30680 Oryza brachyantha OB08G30680 I 0.838
OBART08G23860 Oryza barthii OBART08G23860 I 0.838
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.838
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.838
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.838
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.838
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.838
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.838
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.838
OS08G0563400 Oryza sativa OS08G0563400 I 0.838
Si015156m.g Setaria italica Si015156m.g I 0.838
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.838
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.828
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.828
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.828
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.828
Ca_07763 Cicer arietinum Ca_07763 I 0.828
mgf020773m Mimulus guttatus mgf020773m I 0.828
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.828
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.828
PK23380.1 Cannabis sativa PK23380.1 I 0.821
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.818
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.818
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.818
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.818
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.818
28428.m000040 Ricinus communis 28428.m000040 I 0.818
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.818
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.818
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.818
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.818
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.818
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.818
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.808
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.808
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.808
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.808
Ca_12214 Cicer arietinum Ca_12214 I 0.808
Cla006087 Citrullus lanatus Cla006087 I 0.808
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.808
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.808
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.808
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.798
F775_02052 Aegilops tauschii F775_02052 I 0.798
F775_22967 Aegilops tauschii F775_22967 I 0.798
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.798
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.798
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.798
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.798
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.798
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.798
OB03G13890 Oryza brachyantha OB03G13890 I 0.798
OBART03G03830 Oryza barthii OBART03G03830 I 0.798
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.798
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.798
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.798
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.798
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.798
OS03G0149100 Oryza sativa OS03G0149100 I 0.798
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.798
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.798
Si040019m.g Setaria italica Si040019m.g I 0.798
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.798
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.798
Pm020628 Prunus mume Pm020628 I 0.798
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.798
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.798
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.798
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.798
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.798
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.798
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.788
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.788
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.788
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.788
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.788
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.788
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.788
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.788
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.788
Pm020627 Prunus mume Pm020627 I 0.788
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.788
Gorai.004G073200 Gossypium raimondii Gorai.004G073200 I 0.788
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.788
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.788
GSMUA_Achr11G02110_001 Musa acuminata GSMUA_Achr11G02110_001 I 0.778
Traes_6BS_179B5B6E1 Triticum aestivum Traes_6BS_179B5B6E1 I 0.778
gene08254-v1.0-hybrid Fragaria vesca gene08254-v1.0-hybrid I 0.778
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.768
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.768
TCM_004103 Theobroma cacao TCM_004103 I 0.768
Traes_4AL_BB3F89030 Triticum aestivum Traes_4AL_BB3F89030 N 0.768
Traes_6AS_4EEA3E388 Triticum aestivum Traes_6AS_4EEA3E388 I 0.768
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.768
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.750
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.750
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.747
Bra021737 Brassica rapa Bra021737 N 0.747
Cla015094 Citrullus lanatus Cla015094 I 0.747
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.747
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.737
OB02G44330 Oryza brachyantha OB02G44330 I 0.737
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.737
Si019578m.g Setaria italica Si019578m.g I 0.737
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.737
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.737
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.727
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.727
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.727
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.727
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.727
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.727
OS02G0820500 Oryza sativa OS02G0820500 I 0.727
Thhalv10017299m.g Eutrema salsugineum Thhalv10017299m.g N 0.727
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.723
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.717
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.717
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.717
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.717
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.717
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.717
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.717
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.717
OBART03G10450 Oryza barthii OBART03G10450 I 0.717
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.717
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.717
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.717
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.717
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.717
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.717
OS03G0246900 Oryza sativa OS03G0246900 I 0.717
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.717
Sb01g047000 Sorghum bicolor Sb01g047000 I 0.717
Traes_4DL_05F87867C Triticum aestivum Traes_4DL_05F87867C N 0.717
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.717
Carubv10025067m.g Capsella rubella Carubv10025067m.g N 0.717
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.717
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.717
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.717
GRMZM2G092483 Zea mays GRMZM2G092483 I 0.716
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.711
Bo3g036000 Brassica oleracea Bo3g036000 I 0.710
LBD14 Arabidopsis thaliana AT2G31310 N 0.707
Bo3g036030 Brassica oleracea Bo3g036030 I 0.707
Bo4g052270 Brassica oleracea Bo4g052270 N 0.707
Bra000257 Brassica rapa Bra000257 I 0.707
BRADI1G75120 Brachypodium distachyon BRADI1G75120 N 0.707
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.707
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.707
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.707
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.707
MLOC_10783 Hordeum vulgare MLOC_10783 N 0.707
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.707
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.707
Si037727m.g Setaria italica Si037727m.g I 0.707
TCM_042730 Theobroma cacao TCM_042730 I 0.707
Traes_4AL_3BA1D51E2 Triticum aestivum Traes_4AL_3BA1D51E2 N 0.707
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.707
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.707
Traes_4BL_F71DE14F7 Triticum aestivum Traes_4BL_F71DE14F7 N 0.707
Traes_4BS_B43A99154 Triticum aestivum Traes_4BS_B43A99154 N 0.707
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.707
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.707
29883.m002035 Ricinus communis 29883.m002035 I 0.707
30174.m008898 Ricinus communis 30174.m008898 I 0.707
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.707
Bostr.24513s0089 Boechera stricta Bostr.24513s0089 N 0.707
Cagra.6952s0010 Capsella grandiflora Cagra.6952s0010 N 0.707
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.707
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.707
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.707
MDP0000145761 Malus domestica MDP0000145761 I 0.707
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.707
Pavir.Ib00282 Panicum virgatum Pavir.Ib00282 I 0.707
Pavir.J24246 Panicum virgatum Pavir.J24246 I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.707
OBART02G37570 Oryza barthii OBART02G37570 I 0.701
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.700