CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra018260
(
Brassica rapa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Bra018260
T245053_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra018260.1-P
LOB
7
101
PCGGCKFLRRKCVEGCVFAPYFCYEEGSANFGAIHKVFGASNFSKLISNLPVHDRCEAVRTISYEAQSRLHDPIYGCVSQIFSLQQQCAYKLLGL
Links
Other
LOB
family TFs
Other
Brassica rapa
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo4g052270
Brassica oleracea
Bo4g052270
N
0.869
Thhalv10017299m.g
Eutrema salsugineum
Thhalv10017299m.g
N
0.818
LBD14
Arabidopsis thaliana
AT2G31310
N
0.808
LBD14
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_4001244
N
0.808
Bostr.24513s0089
Boechera stricta
Bostr.24513s0089
N
0.808
Cagra.6952s0010
Capsella grandiflora
Cagra.6952s0010
N
0.808
Carubv10025067m.g
Capsella rubella
Carubv10025067m.g
N
0.798
Bra021737
Brassica rapa
Bra021737
N
0.788
PK23380.1
Cannabis sativa
PK23380.1
I
0.731
TCM_004103
Theobroma cacao
TCM_004103
I
0.726
MLOC_61947
Hordeum vulgare
MLOC_61947
I
0.723
MLOC_52276
Hordeum vulgare
MLOC_52276
I
0.709
Si019578m.g
Setaria italica
Si019578m.g
I
0.702