CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra021513
(
Brassica rapa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Bra021513
T245061_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra021513.1-P
LOB
36
134
ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKDLSPPDKDAAMYTIMFQSDARANDPIEGCYSIIRKLQYQIEYSKNELDMVIQ
Links
Other
LOB
family TFs
Other
Brassica rapa
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo1g134830
Brassica oleracea
Bo1g134830
N
1.000
Bo5g132010
Brassica oleracea
Bo5g132010
N
0.939
Carubv10014142m.g
Capsella rubella
Carubv10014142m.g
N
0.879
LBD22
Arabidopsis thaliana
AT3G13850
N
0.869
LBD22
Arabidopsis lyrata
fgenesh2_kg.3__1489__AT3G13850.1
N
0.869
Bostr.28625s0323
Boechera stricta
Bostr.28625s0323
N
0.869
Cagra.0736s0021
Capsella grandiflora
Cagra.0736s0021
N
0.869
Thhalv10021306m.g
Eutrema salsugineum
Thhalv10021306m.g
N
0.869
cassava34925.m1
Manihot esculenta
cassava34925.m1
N
0.818
cassava34926.m1
Manihot esculenta
cassava34926.m1
N
0.818
Solyc06g062630.2
Solanum lycopersicum
Solyc06g062630.2
N
0.814
TCM_029052
Theobroma cacao
TCM_029052
N
0.808
28694.m000665
Ricinus communis
28694.m000665
N
0.808
cassava2716.m1
Manihot esculenta
cassava2716.m1
N
0.798
Gorai.011G064500
Gossypium raimondii
Gorai.011G064500
N
0.798
MTR_8g017090
Medicago truncatula
MTR_8g017090
N
0.788
PGSC0003DMG400004880
Solanum tuberosum
PGSC0003DMG400004880
N
0.778
Ca_10077
Cicer arietinum
Ca_10077
N
0.778
MDP0000257227
Malus domestica
MDP0000257227
N
0.778
GLYMA07G01170
Glycine max
GLYMA07G01170
N
0.768
POPTR_0003s04520
Populus trichocarpa
POPTR_0003s04520
N
0.768
Cla015827
Citrullus lanatus
Cla015827
N
0.768
Pm013344
Prunus mume
Pm013344
N
0.768
SapurV1A.0697s0010
Salix purpurea
SapurV1A.0697s0010
N
0.768
GLYMA08G20550
Glycine max
GLYMA08G20550
N
0.758
POPTR_0001s20110
Populus trichocarpa
POPTR_0001s20110
N
0.758
TCM_029050
Theobroma cacao
TCM_029050
N
0.758
Cucsa.360530
Cucumis sativus
Cucsa.360530
N
0.758
evm.TU.supercontig_25.41
Carica papaya
evm.TU.supercontig_25.41
N
0.758
chr3.CM0049.30.nd
Lotus japonicus
chr3.CM0049.30.nd
N
0.758
mgf019664m
Mimulus guttatus
mgf019664m
N
0.717
gene23043-v1.0-hybrid
Fragaria vesca
gene23043-v1.0-hybrid
N
0.707