Bra026716 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra026716 T245070_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.707 0.707
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra026716.1-P LOB 14 112

Links

Other LOB family TFs
Other Brassica rapa TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD3 Arabidopsis lyrata Al_scaffold_0001_1711 I 0.960
Bo8g105450 Brassica oleracea Bo8g105450 I 0.960
Thhalv10009386m.g Eutrema salsugineum Thhalv10009386m.g I 0.949
LBD3 Arabidopsis thaliana AT1G16530 I 0.929
Bra026042 Brassica rapa Bra026042 I 0.929
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I 0.929
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I 0.919
Bo5g021980 Brassica oleracea Bo5g021980 I 0.909
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.758
TCM_032557 Theobroma cacao TCM_032557 I 0.758
Cla013678 Citrullus lanatus Cla013678 I 0.758
Pm011040 Prunus mume Pm011040 I 0.758
30169.m006340 Ricinus communis 30169.m006340 I 0.758
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.758
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.758
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.758
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.758
MDP0000268890 Malus domestica MDP0000268890 I 0.758
MDP0000284409 Malus domestica MDP0000284409 I 0.758
PK11564.1 Cannabis sativa PK11564.1 I 0.758
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.747
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.747
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.747
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.747
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.747
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.747
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.747
Ca_06548 Cicer arietinum Ca_06548 I 0.747
Ca_13575 Cicer arietinum Ca_13575 I 0.747
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.747
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.747
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.747
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.747
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.747
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.747
MDP0000121203 Malus domestica MDP0000121203 I 0.747
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.747
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.747
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.737
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.737
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.737
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.737
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.737
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.737
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.737
TCM_029315 Theobroma cacao TCM_029315 I 0.737
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.737
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.737
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.737
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.737
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.737
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.737
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.737
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.737
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.737
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.737
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.737
PK24688.1 Cannabis sativa PK24688.1 I 0.737
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.727
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.727
Cla009336 Citrullus lanatus Cla009336 I 0.727
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.727
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.727
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.727
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.727
Bo4g170770 Brassica oleracea Bo4g170770 I 0.717
Bra021612 Brassica rapa Bra021612 I 0.717
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.717
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.717
Solyc12g100150.1 Solanum lycopersicum Solyc12g100150.1 I 0.717
mgf022958m Mimulus guttatus mgf022958m I 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.717
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.717
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.717
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.717
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.717
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.717
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.717
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.717
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.717
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.717
LBD4 Arabidopsis thaliana AT1G31320 D 0.707
LBD12 Arabidopsis thaliana AT2G30130 I 0.707
Bo4g059700 Brassica oleracea Bo4g059700 I 0.707
Bo7g041000 Brassica oleracea Bo7g041000 I 0.707
Bra014907 Brassica rapa Bra014907 I 0.707
Bra018335 Brassica rapa Bra018335 I 0.707
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.707
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.707
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.707
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.707
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.707
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.707
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.707
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.707
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.707
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.707
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.707
TCM_042447 Theobroma cacao TCM_042447 I 0.707
Ca_12450 Cicer arietinum Ca_12450 I 0.707
Pm018982 Prunus mume Pm018982 I 0.707
29729.m002278 Ricinus communis 29729.m002278 I 0.707
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.707
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.707
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.707
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.707
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.707
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.707
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.707
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.707
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.707
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.707
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.707
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.707
MDP0000265429 Malus domestica MDP0000265429 I 0.707
MDP0000861160 Malus domestica MDP0000861160 I 0.707
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.707
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.707