GRMZM2G092483 (Zea mays)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GRMZM2G092483 T245276_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.727 0.727
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.727 0.727
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G092483_P01 LOB 14 109
GRMZM2G092483_P02 LOB 14 113

Links

Other LOB family TFs
Other Zea mays TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si037727m.g Setaria italica Si037727m.g I 1.000
Sb01g047000 Sorghum bicolor Sb01g047000 I 0.990
Pavir.Ib00282 Panicum virgatum Pavir.Ib00282 I 0.990
Pavir.J24246 Panicum virgatum Pavir.J24246 I 0.990
OBART03G03820 Oryza barthii OBART03G03820 I 0.922
OGLUM03G03700 Oryza glumaepatula OGLUM03G03700 I 0.922
ONIVA03G03570 Oryza nivara ONIVA03G03570 I 0.922
ORUFI03G03540 Oryza rufipogon ORUFI03G03540 I 0.922
OB03G13880 Oryza brachyantha OB03G13880 I 0.919
BGIOSGA011866 Oryza indica BGIOSGA011866 I 0.909
OPUNC03G03510 Oryza punctata OPUNC03G03510 I 0.909
ORGLA03G0035800 Oryza glaberrima ORGLA03G0035800 I 0.909
OS03G0149000 Oryza sativa OS03G0149000 I 0.909
LPERR03G03460 Leersia perrieri LPERR03G03460 I 0.889
MLOC_10783 Hordeum vulgare MLOC_10783 N 0.889
Traes_4AL_3BA1D51E2 Triticum aestivum Traes_4AL_3BA1D51E2 N 0.889
Traes_4DL_05F87867C Triticum aestivum Traes_4DL_05F87867C N 0.879
Traes_4BL_F71DE14F7 Triticum aestivum Traes_4BL_F71DE14F7 N 0.869
Traes_4BS_B43A99154 Triticum aestivum Traes_4BS_B43A99154 N 0.869
BRADI1G75120 Brachypodium distachyon BRADI1G75120 N 0.859
OLONG_020840 Oryza longistaminata OLONG_020840 N 0.859
OMERI07G01670 Oryza meridionalis OMERI07G01670 N 0.859
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.771
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.758
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.758
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.758
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.758
OB02G44330 Oryza brachyantha OB02G44330 I 0.758
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.758
Si019578m.g Setaria italica Si019578m.g I 0.758
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.758
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.758
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.758
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.758
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.758
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.758
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.747
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.747
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.747
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.747
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.747
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.747
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.747
OB03G13890 Oryza brachyantha OB03G13890 I 0.747
OBART03G03830 Oryza barthii OBART03G03830 I 0.747
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.747
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.747
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.747
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.747
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.747
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.747
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.747
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.747
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.747
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.747
OS02G0820500 Oryza sativa OS02G0820500 I 0.747
OS03G0149100 Oryza sativa OS03G0149100 I 0.747
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.747
Si040019m.g Setaria italica Si040019m.g I 0.747
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.747
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.747
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.747
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.747
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.747
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.744
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.737
Bo8g092560 Brassica oleracea Bo8g092560 I 0.737
GSMUA_Achr11G02110_001 Musa acuminata GSMUA_Achr11G02110_001 I 0.737
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.737
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.737
OB08G30680 Oryza brachyantha OB08G30680 I 0.737
OBART08G23860 Oryza barthii OBART08G23860 I 0.737
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.737
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.737
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.737
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.737
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.737
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.737
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.737
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.737
OS08G0563400 Oryza sativa OS08G0563400 I 0.737
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.737
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.727
LBD16 Arabidopsis thaliana AT2G42430 D 0.727
Bo4g016000 Brassica oleracea Bo4g016000 I 0.727
Bo4g191530 Brassica oleracea Bo4g191530 I 0.727
Bra004693 Brassica rapa Bra004693 I 0.727
F775_02052 Aegilops tauschii F775_02052 I 0.727
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.727
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.727
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.727
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.727
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.727
Si015156m.g Setaria italica Si015156m.g I 0.727
Cla006088 Citrullus lanatus Cla006088 I 0.727
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.727
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.727
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.727
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.727
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.727
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.727
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.727
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.727
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.727
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.719
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.719
Bra016877 Brassica rapa Bra016877 I 0.717
F775_22967 Aegilops tauschii F775_22967 I 0.717
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.717
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.717
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.717
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.717
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.717
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.717
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.717
Pm020629 Prunus mume Pm020629 I 0.717
29883.m002035 Ricinus communis 29883.m002035 I 0.717
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.717
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.717
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.717
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.717
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.717
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.717
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.717
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.717
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.717
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.717
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.717
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.717
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.717
Bo4g108600 Brassica oleracea Bo4g108600 I 0.716
Bra016876 Brassica rapa Bra016876 N 0.716
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.716
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.716
OBART02G37570 Oryza barthii OBART02G37570 I 0.713
LBD29 Arabidopsis thaliana AT3G58190 I 0.707
Bra014581 Brassica rapa Bra014581 I 0.707
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.707
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.707
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.707
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.707
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.707
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.707
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.707
TCM_004106 Theobroma cacao TCM_004106 I 0.707
Traes_6BS_179B5B6E1 Triticum aestivum Traes_6BS_179B5B6E1 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
Ca_12214 Cicer arietinum Ca_12214 I 0.707
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.707
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.707
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.707
MDP0000131964 Malus domestica MDP0000131964 I 0.707
MDP0000145761 Malus domestica MDP0000145761 I 0.707
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.707
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.705
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.705
TCM_004103 Theobroma cacao TCM_004103 I 0.705
mgf020773m Mimulus guttatus mgf020773m I 0.705
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.705