CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G096064
(
Zea mays
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
GRMZM2G096064
T245280_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.717
0.717
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G096064_P01
LOB
53
151
PCAACKLLRRKCQPDCMFAPYFPSDNPQKFVHVHRVFGASNVSKILNDLQPFQRQDAVNSLAYEADMRIRDPVYGCVGVICILQRHLSLVRQELACATY
Links
Other
LOB
family TFs
Other
Zea mays
TFs
86 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb09g020440
Sorghum bicolor
Sb09g020440
I
0.848
Traes_1DL_1290B6A52
Triticum aestivum
Traes_1DL_1290B6A52
I
0.846
Pavir.J03307
Panicum virgatum
Pavir.J03307
I
0.828
Si024114m.g
Setaria italica
Si024114m.g
I
0.818
Pavir.J03238
Panicum virgatum
Pavir.J03238
I
0.818
GRMZM2G118250
Zea mays
GRMZM2G118250
I
0.808
Sb03g042310
Sorghum bicolor
Sb03g042310
I
0.808
Si002599m.g
Setaria italica
Si002599m.g
I
0.808
Pavir.Ea03589
Panicum virgatum
Pavir.Ea03589
I
0.808
F775_20715
Aegilops tauschii
F775_20715
I
0.798
MLOC_72525
Hordeum vulgare
MLOC_72525
I
0.798
TRAES3BF084400010CFD_g
Triticum aestivum
TRAES3BF084400010CFD_g
I
0.798
Pavir.J16692
Panicum virgatum
Pavir.J16692
I
0.798
Pavir.J22284
Panicum virgatum
Pavir.J22284
I
0.798
MLOC_61156
Hordeum vulgare
MLOC_61156
I
0.788
OB01G48740
Oryza brachyantha
OB01G48740
I
0.788
TRIUR3_32863
Triticum urartu
TRIUR3_32863
I
0.788
LBD6
Oryza indica
BGIOSGA004955
I
0.778
BRADI2G57380
Brachypodium distachyon
BRADI2G57380
I
0.778
F775_21760
Aegilops tauschii
F775_21760
I
0.778
LPERR01G34430
Leersia perrieri
LPERR01G34430
I
0.778
OB05G24560
Oryza brachyantha
OB05G24560
I
0.778
OBART01G39990
Oryza barthii
OBART01G39990
I
0.778
OGLUM01G44190
Oryza glumaepatula
OGLUM01G44190
I
0.778
OLONG_016086
Oryza longistaminata
OLONG_016086
I
0.778
OMERI01G36900
Oryza meridionalis
OMERI01G36900
I
0.778
ONIVA01G44840
Oryza nivara
ONIVA01G44840
I
0.778
OPUNC01G38680
Oryza punctata
OPUNC01G38680
I
0.778
ORGLA01G0339000
Oryza glaberrima
ORGLA01G0339000
I
0.778
ORUFI01G43320
Oryza rufipogon
ORUFI01G43320
I
0.778
LBD6
Oryza sativa
OS01G0889400
I
0.778
Traes_1AL_4B89B33E3
Triticum aestivum
Traes_1AL_4B89B33E3
I
0.778
BGIOSGA018046
Oryza indica
BGIOSGA018046
I
0.768
BRADI2G25270
Brachypodium distachyon
BRADI2G25270
I
0.768
GRMZM2G133806
Zea mays
GRMZM2G133806
I
0.768
OGLUM05G17630
Oryza glumaepatula
OGLUM05G17630
I
0.768
ORGLA05G0143500
Oryza glaberrima
ORGLA05G0143500
I
0.768
ORUFI05G17830
Oryza rufipogon
ORUFI05G17830
I
0.768
OS05G0417000
Oryza sativa
OS05G0417000
I
0.768
VIT_00s0215g00010
Vitis vinifera
VIT_00s0215g00010
I
0.759
TRIUR3_23928
Triticum urartu
TRIUR3_23928
I
0.758
PK18922.1
Cannabis sativa
PK18922.1
I
0.754
GSMUA_Achr7G23710_001
Musa acuminata
GSMUA_Achr7G23710_001
I
0.750
LPERR05G13240
Leersia perrieri
LPERR05G13240
I
0.732
GSMUA_Achr11G26500_001
Musa acuminata
GSMUA_Achr11G26500_001
I
0.727
GSMUA_Achr5G25770_001
Musa acuminata
GSMUA_Achr5G25770_001
I
0.727
Solyc11g008830.1
Solanum lycopersicum
Solyc11g008830.1
I
0.727
mgf014755m
Mimulus guttatus
mgf014755m
I
0.727
Ciclev10017910m.g
Citrus clementina
Ciclev10017910m.g
I
0.727
Gorai.007G350300
Gossypium raimondii
Gorai.007G350300
I
0.727
orange1.1g027472m.g
Citrus sinensis
orange1.1g027472m.g
I
0.727
F775_33210
Aegilops tauschii
F775_33210
I
0.726
evm.TU.supercontig_331.6
Carica papaya
evm.TU.supercontig_331.6
I
0.723
PK13228.1
Cannabis sativa
PK13228.1
I
0.719
LBD6
Arabidopsis thaliana
AT1G65620
D
0.717
Bo2g051420
Brassica oleracea
Bo2g051420
I
0.717
Bra039733
Brassica rapa
Bra039733
I
0.717
AS2
Arabidopsis lyrata
fgenesh2_kg.2__796__AT1G65620.2
I
0.717
GLYMA13G26020
Glycine max
GLYMA13G26020
I
0.717
GLYMA15G36310
Glycine max
GLYMA15G36310
I
0.717
GRMZM2G154320
Zea mays
GRMZM2G154320
N
0.717
MTR_8g040900
Medicago truncatula
MTR_8g040900
I
0.717
PGSC0003DMG400000974
Solanum tuberosum
PGSC0003DMG400000974
I
0.717
POPTR_0008s07930
Populus trichocarpa
POPTR_0008s07930
I
0.717
POPTR_0010s18460
Populus trichocarpa
POPTR_0010s18460
I
0.717
PRUPE_ppa027059mg
Prunus persica
PRUPE_ppa027059mg
I
0.717
Solyc03g063140.2
Solanum lycopersicum
Solyc03g063140.2
I
0.717
TCM_024217
Theobroma cacao
TCM_024217
I
0.717
AS2
Vitis vinifera
VIT_00s0340g00090
I
0.717
Ca_20200
Cicer arietinum
Ca_20200
I
0.717
Cla005851
Citrullus lanatus
Cla005851
I
0.717
29929.m004500
Ricinus communis
29929.m004500
I
0.717
cassava1141.valid.m1
Manihot esculenta
cassava1141.valid.m1
I
0.717
Cucsa.178830
Cucumis sativus
Cucsa.178830
I
0.717
Aquca_058_00006
Aquilegia coerulea
Aquca_058_00006
I
0.717
Bostr.26959s0351
Boechera stricta
Bostr.26959s0351
I
0.717
Cagra.10809s0001
Capsella grandiflora
Cagra.10809s0001
I
0.717
Carubv10020974m.g
Capsella rubella
Carubv10020974m.g
I
0.717
Eucgr.C02148
Eucalyptus grandis
Eucgr.C02148
I
0.717
evm.TU.supercontig_39.110
Carica papaya
evm.TU.supercontig_39.110
I
0.717
gene21541-v1.0-hybrid
Fragaria vesca
gene21541-v1.0-hybrid
I
0.717
MDP0000273432
Malus domestica
MDP0000273432
I
0.717
SapurV1A.0093s0490
Salix purpurea
SapurV1A.0093s0490
I
0.717
SapurV1A.0164s0090
Salix purpurea
SapurV1A.0164s0090
I
0.717
Thhalv10019572m.g
Eutrema salsugineum
Thhalv10019572m.g
I
0.717
MDP0000643326
Malus domestica
MDP0000643326
I
0.707