CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr4G28810_001
(
Musa acuminata
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
GSMUA_Achr4G28810_001
T245339_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.737
0.737
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.737
0.737
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr4P28810_001
LOB
17
117
RCAACKTMKRKCVKGCIFAPYFDAERGAARFAAVHKLFGASNVSKLLLQIPIDKRVDAIATLCYEAQARLRDPVYGCVAHIFALQQQQVVNLRAELSILQT
Links
Other
LOB
family TFs
Other
Musa acuminata
TFs
89 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BRADI1G68170
Brachypodium distachyon
BRADI1G68170
I
0.798
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.788
GRMZM2G110913
Zea mays
GRMZM2G110913
I
0.788
GRMZM2G150594
Zea mays
GRMZM2G150594
I
0.788
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.788
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.788
MLOC_55239
Hordeum vulgare
MLOC_55239
I
0.788
OBART03G10450
Oryza barthii
OBART03G10450
I
0.788
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.788
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.788
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.788
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.788
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.788
OS03G0246900
Oryza sativa
OS03G0246900
I
0.788
Sb01g041130
Sorghum bicolor
Sb01g041130
I
0.788
Traes_4AS_5971FF832
Triticum aestivum
Traes_4AS_5971FF832
I
0.788
Traes_4DL_A2012EA68
Triticum aestivum
Traes_4DL_A2012EA68
I
0.788
30174.m008898
Ricinus communis
30174.m008898
I
0.788
cassava36912.valid.m1
Manihot esculenta
cassava36912.valid.m1
I
0.788
Ciclev10021992m.g
Citrus clementina
Ciclev10021992m.g
I
0.788
orange1.1g036534m.g
Citrus sinensis
orange1.1g036534m.g
I
0.788
Pavir.J34872
Panicum virgatum
Pavir.J34872
I
0.788
GSMUA_Achr1G02520_001
Musa acuminata
GSMUA_Achr1G02520_001
I
0.778
GSMUA_Achr2G11240_001
Musa acuminata
GSMUA_Achr2G11240_001
I
0.778
PRUPE_ppa010383mg
Prunus persica
PRUPE_ppa010383mg
I
0.778
Traes_4BL_3FB579782
Triticum aestivum
Traes_4BL_3FB579782
I
0.778
LBD30
Vitis vinifera
VIT_15s0048g00830
I
0.778
Pm017936
Prunus mume
Pm017936
I
0.778
cassava28659.m1
Manihot esculenta
cassava28659.m1
I
0.778
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.778
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.778
Gorai.004G161100
Gossypium raimondii
Gorai.004G161100
I
0.778
Gorai.008G114400
Gossypium raimondii
Gorai.008G114400
I
0.778
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.778
GLYMA03G02620
Glycine max
GLYMA03G02620
I
0.768
GSMUA_AchrUn_randomG10470_001
Musa acuminata
GSMUA_AchrUn_randomG10470_001
I
0.768
Cla007068
Citrullus lanatus
Cla007068
I
0.768
Cucsa.362840
Cucumis sativus
Cucsa.362840
I
0.768
SapurV1A.0024s0780
Salix purpurea
SapurV1A.0024s0780
I
0.768
Solyc01g091420.1
Solanum lycopersicum
Solyc01g091420.1
I
0.758
Pavir.Ia02614
Panicum virgatum
Pavir.Ia02614
I
0.758
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.747
GLYMA01G34540
Glycine max
GLYMA01G34540
I
0.747
gene19355-v1.0-hybrid
Fragaria vesca
gene19355-v1.0-hybrid
I
0.747
Pavir.Ia03917
Panicum virgatum
Pavir.Ia03917
I
0.747
LBD18
Arabidopsis thaliana
AT2G45420
D
0.737
Bo4g024620
Brassica oleracea
Bo4g024620
I
0.737
Bra004910
Brassica rapa
Bra004910
I
0.737
BRADI3G22510
Brachypodium distachyon
BRADI3G22510
I
0.737
LBD18
Arabidopsis lyrata
fgenesh2_kg.4__2737__AT2G45420.1
I
0.737
Ca_20428
Cicer arietinum
Ca_20428
I
0.737
Bostr.25993s0233
Boechera stricta
Bostr.25993s0233
I
0.737
Cagra.0698s0021
Capsella grandiflora
Cagra.0698s0021
I
0.737
Carubv10025050m.g
Capsella rubella
Carubv10025050m.g
I
0.737
evm.TU.supercontig_18.117
Carica papaya
evm.TU.supercontig_18.117
I
0.737
Pavir.Ib02517
Panicum virgatum
Pavir.Ib02517
I
0.737
Thhalv10001791m.g
Eutrema salsugineum
Thhalv10001791m.g
I
0.737
LjSGA_002536.2
Lotus japonicus
LjSGA_002536.2
I
0.737
Bra040311
Brassica rapa
Bra040311
I
0.727
GRMZM2G076327
Zea mays
GRMZM2G076327
I
0.727
Cla007069
Citrullus lanatus
Cla007069
I
0.727
SapurV1A.0024s0790
Salix purpurea
SapurV1A.0024s0790
I
0.727
BGIOSGA032254
Oryza indica
BGIOSGA032254
I
0.717
Bo4g195520
Brassica oleracea
Bo4g195520
I
0.717
OB10G12360
Oryza brachyantha
OB10G12360
I
0.717
OGLUM10G03230
Oryza glumaepatula
OGLUM10G03230
I
0.717
ONIVA10G03250
Oryza nivara
ONIVA10G03250
I
0.717
OPUNC10G02630
Oryza punctata
OPUNC10G02630
I
0.717
ORGLA10G0025200
Oryza glaberrima
ORGLA10G0025200
I
0.717
ORUFI10G03180
Oryza rufipogon
ORUFI10G03180
I
0.717
OS10G0162600
Oryza sativa
OS10G0162600
I
0.717
PRUPE_ppa017589mg
Prunus persica
PRUPE_ppa017589mg
I
0.717
gw1.157.74.1
Physcomitrella patens
gw1.157.74.1
I
0.717
gw1.35.169.1
Physcomitrella patens
gw1.35.169.1
I
0.717
Aquca_009_00560
Aquilegia coerulea
Aquca_009_00560
I
0.717
Aquca_013_00580
Aquilegia coerulea
Aquca_013_00580
I
0.717
gene19356-v1.0-hybrid
Fragaria vesca
gene19356-v1.0-hybrid
I
0.717
PK23185.1
Cannabis sativa
PK23185.1
I
0.717
PK25573.1
Cannabis sativa
PK25573.1
I
0.717
GLYMA01G34523
Glycine max
GLYMA01G34523
I
0.707
MTR_8g036105
Medicago truncatula
MTR_8g036105
I
0.707
OLONG_001985
Oryza longistaminata
OLONG_001985
I
0.707
POPTR_0014s06580
Populus trichocarpa
POPTR_0014s06580
I
0.707
TCM_005497
Theobroma cacao
TCM_005497
I
0.707
VIT_15s0048g00840
Vitis vinifera
VIT_15s0048g00840
I
0.707
Pm017935
Prunus mume
Pm017935
I
0.707
cassava28672.m1
Manihot esculenta
cassava28672.m1
I
0.707
gw1.61.81.1
Physcomitrella patens
gw1.61.81.1
I
0.707
MDP0000429067
Malus domestica
MDP0000429067
I
0.707