OBART02G37570 (Oryza barthii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OBART02G37570 T245535_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.782 0.782
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.782 0.782
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.782 0.782
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.701 0.701
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.701 0.701
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART02G37570.1 LOB 5 92

Links

Other LOB family TFs
Other Oryza barthii TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.966
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.966
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.966
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.966
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.966
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.966
OS02G0820500 Oryza sativa OS02G0820500 I 0.966
Si019578m.g Setaria italica Si019578m.g I 0.931
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.920
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.920
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.920
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.908
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.908
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.851
OB02G44330 Oryza brachyantha OB02G44330 I 0.838
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.838
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.828
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.828
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.828
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.828
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.816
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.816
OLONG_009479 Oryza longistaminata OLONG_009479 N 0.815
mgf026090m Mimulus guttatus mgf026090m I 0.808
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.805
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.805
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.793
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.793
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.793
LBD16 Arabidopsis thaliana AT2G42430 D 0.782
Bra016877 Brassica rapa Bra016877 I 0.782
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.782
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.770
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.770
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.770
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.759
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.759
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.759
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.759
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.747
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.747
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.747
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.737
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.737
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.737
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.737
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.736
F775_22967 Aegilops tauschii F775_22967 I 0.736
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.736
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.736
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.736
Si015156m.g Setaria italica Si015156m.g I 0.736
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.736
mgf020773m Mimulus guttatus mgf020773m I 0.736
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.736
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.731
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.727
Cla006088 Citrullus lanatus Cla006088 I 0.727
Pm020629 Prunus mume Pm020629 I 0.727
29883.m002035 Ricinus communis 29883.m002035 I 0.727
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.727
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.727
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.727
Bo8g092560 Brassica oleracea Bo8g092560 I 0.724
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.724
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.724
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.724
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.724
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.724
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.724
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.724
PK23185.1 Cannabis sativa PK23185.1 I 0.724
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.717
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.717
TCM_004106 Theobroma cacao TCM_004106 I 0.717
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.717
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.717
MDP0000131964 Malus domestica MDP0000131964 I 0.717
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.717
GRMZM2G092483 Zea mays GRMZM2G092483 I 0.713
Si037727m.g Setaria italica Si037727m.g I 0.713
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.707
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.707
MDP0000145761 Malus domestica MDP0000145761 I 0.707
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.707
LBD20 Arabidopsis thaliana AT3G03760 I 0.701
Bra016876 Brassica rapa Bra016876 N 0.701
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.701
LPERR03G03460 Leersia perrieri LPERR03G03460 I 0.701
OB10G12360 Oryza brachyantha OB10G12360 I 0.701
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I 0.701
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.701
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.701
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.701
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.701
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.701
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.701
Pavir.J24246 Panicum virgatum Pavir.J24246 I 0.701