OBART02G37570 (Oryza barthii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OBART02G37570 T245535_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.782 0.782
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.782 0.782
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.782 0.782
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.701 0.701
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.701 0.701
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART02G37570.1 LOB 5 92

Links

Other LOB family TFs
Other Oryza barthii TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29872.m000537 Ricinus communis 29872.m000537 N
Bo4g143710 Brassica oleracea Bo4g143710 N
Bostr.17016s0016 Boechera stricta Bostr.17016s0016 N
Bostr.25375s0003 Boechera stricta Bostr.25375s0003 N
Bostr.7200s0031 Boechera stricta Bostr.7200s0031 N
Bra025456 Brassica rapa Bra025456 N
Cagra.6263s0002 Capsella grandiflora Cagra.6263s0002 N
Carubv10004949m.g Capsella rubella Carubv10004949m.g N
cassava29451.valid.m1 Manihot esculenta cassava29451.valid.m1 N
Ca_11130 Cicer arietinum Ca_11130 N
chr3.CM0460.360.nd Lotus japonicus chr3.CM0460.360.nd N
Ciclev10011732m.g Citrus clementina Ciclev10011732m.g N
Cla005525 Citrullus lanatus Cla005525 N
Cucsa.180010 Cucumis sativus Cucsa.180010 N
Eucgr.A00903 Eucalyptus grandis Eucgr.A00903 N
evm.TU.supercontig_8.295 Carica papaya evm.TU.supercontig_8.295 N
fgenesh2_kg.7__3225__AT5G41920.1 Arabidopsis lyrata fgenesh2_kg.7__3225__AT5G41920.1 N
gene24339-v1.0-hybrid Fragaria vesca gene24339-v1.0-hybrid N
GLYMA11G10220 Glycine max GLYMA11G10220 N
Gorai.004G063200 Gossypium raimondii Gorai.004G063200 N
LPERR11G01220 Leersia perrieri LPERR11G01220 N
MDP0000287321 Malus domestica MDP0000287321 N
OB07G24850 Oryza brachyantha OB07G24850 N
orange1.1g013903m.g Citrus sinensis orange1.1g013903m.g N
OS07G0567700 Oryza sativa OS07G0567700 N
PK21090.1 Cannabis sativa PK21090.1 N
Pm014866 Prunus mume Pm014866 N
POPTR_0006s02220 Populus trichocarpa POPTR_0006s02220 N
POPTR_0016s02030 Populus trichocarpa POPTR_0016s02030 N
PRUPE_ppa005742mg Prunus persica PRUPE_ppa005742mg N
SapurV1A.0154s0180 Salix purpurea SapurV1A.0154s0180 N
SapurV1A.0295s0450 Salix purpurea SapurV1A.0295s0450 N
scaffold_21300003.1 Arabidopsis lyrata scaffold_21300003.1 N
scaffold_503520.1 Arabidopsis lyrata scaffold_503520.1 N
TCM_002021 Theobroma cacao TCM_002021 N
Thhalv10027784m.g Eutrema salsugineum Thhalv10027784m.g N
Traes_2AS_455BD2CA1 Triticum aestivum Traes_2AS_455BD2CA1 N
VIT_03s0017g01660 Vitis vinifera VIT_03s0017g01660 N