CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OBART02G37570
(
Oryza barthii
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
OBART02G37570
T245535_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.782
0.782
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.782
0.782
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.782
0.782
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.701
0.701
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.701
0.701
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OBART02G37570.1
LOB
5
92
MLVCVFAPYFSSEQGAARFAAIHKVFGASNASKLLSHLPVADRCEAVVTITYEAQARLRDPVYGCVAQIFALQQQVAILQAQLMQARA
Links
Other
LOB
family TFs
Other
Oryza barthii
TFs
98 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LBD16
Arabidopsis thaliana
AT2G42430
D
0.782
Ciclev10024416m.g
Citrus clementina
Ciclev10024416m.g
I
0.737
TCM_004106
Theobroma cacao
TCM_004106
I
0.717
Carubv10025548m.g
Capsella rubella
Carubv10025548m.g
I
0.793
Carubv10015417m.g
Capsella rubella
Carubv10015417m.g
I
0.701
Cagra.2636s0029
Capsella grandiflora
Cagra.2636s0029
I
0.793
Cagra.2098s0013
Capsella grandiflora
Cagra.2098s0013
I
0.701
Bostr.19046s0098
Boechera stricta
Bostr.19046s0098
I
0.701
Aquca_034_00401
Aquilegia coerulea
Aquca_034_00401
I
0.727
Aquca_017_00693
Aquilegia coerulea
Aquca_017_00693
I
0.701
Aquca_017_00683
Aquilegia coerulea
Aquca_017_00683
I
0.770
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.724
mgf026090m
Mimulus guttatus
mgf026090m
I
0.808
mgf020773m
Mimulus guttatus
mgf020773m
I
0.736
gw1.261.12.1
Physcomitrella patens
gw1.261.12.1
I
0.701
Cucsa.053440
Cucumis sativus
Cucsa.053440
I
0.717
cassava15612.m1
Manihot esculenta
cassava15612.m1
I
0.737
29883.m002035
Ricinus communis
29883.m002035
I
0.727
Pm020629
Prunus mume
Pm020629
I
0.727
Cla006088
Citrullus lanatus
Cla006088
I
0.727
LBD16
Vitis vinifera
VIT_07s0005g03030
I
0.851
TRIUR3_01477
Triticum urartu
TRIUR3_01477
I
0.920
Traes_6DL_850266B2A
Triticum aestivum
Traes_6DL_850266B2A
I
0.908
Traes_6AL_D6045E37C
Triticum aestivum
Traes_6AL_D6045E37C
I
0.920
Traes_4DS_11C3B0459
Triticum aestivum
Traes_4DS_11C3B0459
I
0.736
PDK_20s1428661g002
Phoenix dactylifera
PDK_20s1428661g002
I
0.805
orange1.1g040761m.g
Citrus sinensis
orange1.1g040761m.g
I
0.737
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.736
PK23185.1
Cannabis sativa
PK23185.1
I
0.724
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.736
SapurV1A.0378s0180
Salix purpurea
SapurV1A.0378s0180
I
0.707
SapurV1A.0024s0780
Salix purpurea
SapurV1A.0024s0780
I
0.724
SapurV1A.0006s0980
Salix purpurea
SapurV1A.0006s0980
I
0.717
Pavir.J39638
Panicum virgatum
Pavir.J39638
I
0.828
Pavir.J24246
Panicum virgatum
Pavir.J24246
I
0.701
Pavir.J03376
Panicum virgatum
Pavir.J03376
I
0.759
Pavir.Ia03917
Panicum virgatum
Pavir.Ia03917
I
0.724
Pavir.Aa00097
Panicum virgatum
Pavir.Aa00097
I
0.828
Eucgr.B01529
Eucalyptus grandis
Eucgr.B01529
I
0.724
MDP0000145761
Malus domestica
MDP0000145761
I
0.707
MDP0000131964
Malus domestica
MDP0000131964
I
0.717
Lus10033872.g
Linum usitatissimum
Lus10033872.g
I
0.759
Lus10024877.g
Linum usitatissimum
Lus10024877.g
I
0.707
Gorai.007G144400
Gossypium raimondii
Gorai.007G144400
I
0.816
Gorai.004G219900
Gossypium raimondii
Gorai.004G219900
I
0.747
Gorai.004G073400
Gossypium raimondii
Gorai.004G073400
I
0.717
Gorai.001G251600
Gossypium raimondii
Gorai.001G251600
I
0.805
gene08250-v1.0-hybrid
Fragaria vesca
gene08250-v1.0-hybrid
I
0.727
evm.TU.supercontig_50.43
Carica papaya
evm.TU.supercontig_50.43
I
0.727
Eucgr.K03284
Eucalyptus grandis
Eucgr.K03284
I
0.793
GRMZM2G075499
Zea mays
GRMZM2G075499
I
0.828
Solyc09g066260.2
Solanum lycopersicum
Solyc09g066260.2
I
0.770
LPERR03G03460
Leersia perrieri
LPERR03G03460
I
0.701
LPERR02G31040
Leersia perrieri
LPERR02G31040
I
0.908
GSMUA_AchrUn_randomG10470_001
Musa acuminata
GSMUA_AchrUn_randomG10470_001
I
0.747
GSMUA_AchrUn_randomG07730_001
Musa acuminata
GSMUA_AchrUn_randomG07730_001
I
0.759
GSMUA_Achr8G14330_001
Musa acuminata
GSMUA_Achr8G14330_001
I
0.724
GSMUA_Achr5G13230_001
Musa acuminata
GSMUA_Achr5G13230_001
I
0.782
GSMUA_Achr4G25190_001
Musa acuminata
GSMUA_Achr4G25190_001
I
0.759
GSMUA_Achr3G27340_001
Musa acuminata
GSMUA_Achr3G27340_001
I
0.724
GSMUA_Achr1G01350_001
Musa acuminata
GSMUA_Achr1G01350_001
I
0.770
GRMZM2G092483
Zea mays
GRMZM2G092483
I
0.713
LPERR08G20530
Leersia perrieri
LPERR08G20530
I
0.736
GLYMA19G34600
Glycine max
GLYMA19G34600
I
0.736
GLYMA19G34590
Glycine max
GLYMA19G34590
I
0.707
GLYMA10G04050
Glycine max
GLYMA10G04050
I
0.736
GLYMA03G31830
Glycine max
GLYMA03G31830
I
0.717
LBD20
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000301
I
0.701
F775_22967
Aegilops tauschii
F775_22967
I
0.736
BRADI3G55680
Brachypodium distachyon
BRADI3G55680
I
0.747
Bra016877
Brassica rapa
Bra016877
I
0.782
Bo8g092560
Brassica oleracea
Bo8g092560
I
0.724
BGIOSGA005344
Oryza indica
BGIOSGA005344
I
0.966
LBD20
Arabidopsis thaliana
AT3G03760
I
0.701
PGSC0003DMG400020069
Solanum tuberosum
PGSC0003DMG400020069
I
0.701
Solyc06g083930.1
Solanum lycopersicum
Solyc06g083930.1
I
0.724
Solyc01g098220.1
Solanum lycopersicum
Solyc01g098220.1
I
0.701
Si037727m.g
Setaria italica
Si037727m.g
I
0.713
Si019578m.g
Setaria italica
Si019578m.g
I
0.931
Si015156m.g
Setaria italica
Si015156m.g
I
0.736
Sb04g037550
Sorghum bicolor
Sb04g037550
I
0.828
PRUPE_ppa025349mg
Prunus persica
PRUPE_ppa025349mg
I
0.737
POPTR_0047s00280
Populus trichocarpa
POPTR_0047s00280
I
0.731
POPTR_0005s24320
Populus trichocarpa
POPTR_0005s24320
I
0.727
POPTR_0002s04210
Populus trichocarpa
POPTR_0002s04210
I
0.816
MLOC_61947
Hordeum vulgare
MLOC_61947
I
0.920
PGSC0003DMG400009713
Solanum tuberosum
PGSC0003DMG400009713
I
0.717
OS02G0820500
Oryza sativa
OS02G0820500
I
0.966
ORUFI02G39110
Oryza rufipogon
ORUFI02G39110
I
0.966
ORGLA02G0327800
Oryza glaberrima
ORGLA02G0327800
I
0.966
OPUNC02G34750
Oryza punctata
OPUNC02G34750
I
0.838
ONIVA02G40360
Oryza nivara
ONIVA02G40360
I
0.966
OMERI02G35350
Oryza meridionalis
OMERI02G35350
I
0.966
OGLUM02G38740
Oryza glumaepatula
OGLUM02G38740
I
0.966
OB10G12360
Oryza brachyantha
OB10G12360
I
0.701
OB02G44330
Oryza brachyantha
OB02G44330
I
0.838
OLONG_009479
Oryza longistaminata
OLONG_009479
N
0.815
Bra016876
Brassica rapa
Bra016876
N
0.701