PGSC0003DMG400007503 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400007503 T245814_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400019410 LOB 35 133

Links

Other LOB family TFs
Other Solanum tuberosum TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD4 Arabidopsis thaliana AT1G31320 D 0.707
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.778
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.707
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.707
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.889
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.899
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.889
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.889
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.899
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.869
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.808
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.848
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.707
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.889
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.717
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.889
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.889
OB05G11740 Oryza brachyantha OB05G11740 I 0.838
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.727
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.899
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.707
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.731
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.707
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.879
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.889
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.909
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.707
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.717
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.899
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.818
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.838
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.909
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.707
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.889
TCM_032557 Theobroma cacao TCM_032557 I 0.707
TCM_041094 Theobroma cacao TCM_041094 I 0.909
TCM_043081 Theobroma cacao TCM_043081 I 0.889
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.707
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.879
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.889
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.879
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.707
Ca_04287 Cicer arietinum Ca_04287 I 0.889
Ca_13575 Cicer arietinum Ca_13575 I 0.717
Ca_14605 Cicer arietinum Ca_14605 I 0.889
Cla000556 Citrullus lanatus Cla000556 I 0.899
Cla013678 Citrullus lanatus Cla013678 I 0.707
Cla020379 Citrullus lanatus Cla020379 I 0.899
Pm000938 Prunus mume Pm000938 I 0.889
Pm011040 Prunus mume Pm011040 I 0.707
Pm018585 Prunus mume Pm018585 I 0.889
Pm018982 Prunus mume Pm018982 I 0.707
30111.m000703 Ricinus communis 30111.m000703 I 0.909
30169.m006340 Ricinus communis 30169.m006340 I 0.707
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.909
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.717
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.707
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.919
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.909
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.909
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.717
mgf018189m Mimulus guttatus mgf018189m I 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.707
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.707
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.707
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.707
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.707
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.717
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.899
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.788
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.889
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.879
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.717
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.879
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.707
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.707
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.889
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.909
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.707
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.889
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.879
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.889
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.869
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.859
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.717
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.859
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.859
MDP0000121203 Malus domestica MDP0000121203 I 0.707
MDP0000123013 Malus domestica MDP0000123013 I 0.859
MDP0000151784 Malus domestica MDP0000151784 I 0.859
MDP0000155138 Malus domestica MDP0000155138 I 0.707
MDP0000218986 Malus domestica MDP0000218986 I 0.889
MDP0000268890 Malus domestica MDP0000268890 I 0.707
MDP0000284409 Malus domestica MDP0000284409 I 0.707
MDP0000318244 Malus domestica MDP0000318244 I 0.889
MDP0000319331 Malus domestica MDP0000319331 I 0.909
MDP0000822986 Malus domestica MDP0000822986 I 0.848
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.889
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.717
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.788
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.899
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.808
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.808
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.889
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.879
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.727
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.717
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.707
PK11564.1 Cannabis sativa PK11564.1 I 0.707
PK23777.1 Cannabis sativa PK23777.1 I 0.889
PK27389.1 Cannabis sativa PK27389.1 I 0.899
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.899
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.859
LBD11 Arabidopsis thaliana AT2G28500 N 0.848
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.788
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.788
Bo01039s010 Brassica oleracea Bo01039s010 N 0.859
Bo3g040220 Brassica oleracea Bo3g040220 N 0.838
Bo4g165420 Brassica oleracea Bo4g165420 N 0.848
Bo5g008590 Brassica oleracea Bo5g008590 N 0.808
Bo8g112780 Brassica oleracea Bo8g112780 N 0.808
Bra000491 Brassica rapa Bra000491 N 0.838
Bra011942 Brassica rapa Bra011942 N 0.838
Bra018675 Brassica rapa Bra018675 N 0.808
Bra031599 Brassica rapa Bra031599 N 0.798
Bra035698 Brassica rapa Bra035698 N 0.848
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.737
F775_02335 Aegilops tauschii F775_02335 N 0.758
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.828
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.859
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.889
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.798
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.788
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.808
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.737
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.778
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.808
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N 0.707
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.737
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.828
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.798
OB03G23270 Oryza brachyantha OB03G23270 N 0.778
OBART03G13260 Oryza barthii OBART03G13260 N 0.788
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.788
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.788
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.788
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.788
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.788
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.828
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.788
OS03G0287400 Oryza sativa OS03G0287400 N 0.788
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.798
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.737
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.798
Si024430m.g Setaria italica Si024430m.g N 0.788
Si037280m.g Setaria italica Si037280m.g N 0.788
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.808
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.943
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.798
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.798
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.798
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.737
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.758
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.747
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.758
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.798
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.758
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.717
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.737
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.717
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.747
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.727
Ca_02507 Cicer arietinum Ca_02507 N 0.828
Cla005133 Citrullus lanatus Cla005133 N 0.768
Cla005134 Citrullus lanatus Cla005134 N 0.869
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.851
cassava41200.m1 Manihot esculenta cassava41200.m1 N 0.717
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.879
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.889
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.727
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.828
mgf015666m Mimulus guttatus mgf015666m N 0.869
mgf019622m Mimulus guttatus mgf019622m N 0.788
mgf022524m Mimulus guttatus mgf022524m N 0.828
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.859
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.838
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.848
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.828
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.859
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.838
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.859
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.838
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.859
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.869
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.818
MDP0000879799 Malus domestica MDP0000879799 N 0.869
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.798
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.798
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.838
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.848
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.869