CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400027078
(
Solanum tuberosum
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
PGSC0003DMG400027078
T245837_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.889
0.889
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.707
0.707
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400069646
LOB
10
108
PCAACKFLRRKCLPGCIFAPHFPPEEPHKFANVHKIFGASNVTKLLNEVLPDQREDAVNTLAYEAEARVRDPVYGCVSAITFLQRQVERLEKELDAAKA
Links
Other
LOB
family TFs
Other
Solanum tuberosum
TFs
168 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29917.m001993
Ricinus communis
29917.m001993
I
0.848
29929.m004500
Ricinus communis
29929.m004500
I
0.707
30147.m013890
Ricinus communis
30147.m013890
I
0.889
AC233943.1_FG002
Zea mays
AC233943.1_FG002
I
0.848
AMTR_s00066p00120340
Amborella trichopoda
AMTR_s00066p00120340
I
0.717
Aquca_011_00559
Aquilegia coerulea
Aquca_011_00559
I
0.848
Aquca_058_00006
Aquilegia coerulea
Aquca_058_00006
I
0.727
Aquca_061_00084
Aquilegia coerulea
Aquca_061_00084
I
0.848
AS2
Arabidopsis lyrata
fgenesh2_kg.2__796__AT1G65620.2
I
0.707
AS2
Vitis vinifera
VIT_00s0340g00090
I
0.707
Bo2g051420
Brassica oleracea
Bo2g051420
I
0.707
Bo2g144870
Brassica oleracea
Bo2g144870
I
0.707
Bo3g104760
Brassica oleracea
Bo3g104760
I
0.889
Bo7g085860
Brassica oleracea
Bo7g085860
I
0.747
Bo9g008330
Brassica oleracea
Bo9g008330
I
0.727
Bo9g017470
Brassica oleracea
Bo9g017470
I
0.879
Bostr.0556s0446
Boechera stricta
Bostr.0556s0446
I
0.747
Bostr.0568s0498
Boechera stricta
Bostr.0568s0498
I
0.889
Bostr.26959s0351
Boechera stricta
Bostr.26959s0351
I
0.707
Bra025294
Brassica rapa
Bra025294
I
0.747
Bra033019
Brassica rapa
Bra033019
I
0.707
Bra035860
Brassica rapa
Bra035860
I
0.859
Bra038606
Brassica rapa
Bra038606
I
0.889
Bra039072
Brassica rapa
Bra039072
I
0.727
Bra039733
Brassica rapa
Bra039733
I
0.707
BRADI2G04270
Brachypodium distachyon
BRADI2G04270
I
0.828
Cagra.10809s0001
Capsella grandiflora
Cagra.10809s0001
I
0.707
Cagra.5118s0045
Capsella grandiflora
Cagra.5118s0045
I
0.889
Cagra.5575s0004
Capsella grandiflora
Cagra.5575s0004
I
0.747
Carubv10018238m.g
Capsella rubella
Carubv10018238m.g
I
0.747
Carubv10020974m.g
Capsella rubella
Carubv10020974m.g
I
0.707
Carubv10028397m.g
Capsella rubella
Carubv10028397m.g
I
0.879
cassava1141.valid.m1
Manihot esculenta
cassava1141.valid.m1
I
0.707
cassava12464.valid.m1
Manihot esculenta
cassava12464.valid.m1
I
0.848
cassava19770.m1
Manihot esculenta
cassava19770.m1
I
0.889
cassava33952.m1
Manihot esculenta
cassava33952.m1
I
0.889
cassava3724.m1
Manihot esculenta
cassava3724.m1
I
0.788
Ca_07463
Cicer arietinum
Ca_07463
I
0.869
Ca_08824
Cicer arietinum
Ca_08824
I
0.879
Ca_20200
Cicer arietinum
Ca_20200
I
0.707
Ca_24372
Cicer arietinum
Ca_24372
I
0.828
chr1.CM0171.410.nc
Lotus japonicus
chr1.CM0171.410.nc
I
0.869
chr2.LjT30P12.80.nc
Lotus japonicus
chr2.LjT30P12.80.nc
I
0.818
Ciclev10017006m.g
Citrus clementina
Ciclev10017006m.g
I
0.798
Ciclev10017910m.g
Citrus clementina
Ciclev10017910m.g
I
0.707
Ciclev10022371m.g
Citrus clementina
Ciclev10022371m.g
I
0.848
Cla003499
Citrullus lanatus
Cla003499
I
0.818
Cla005851
Citrullus lanatus
Cla005851
I
0.707
Cla010600
Citrullus lanatus
Cla010600
I
0.828
Cla017388
Citrullus lanatus
Cla017388
I
0.818
Cla019510
Citrullus lanatus
Cla019510
I
0.889
Cucsa.011300
Cucumis sativus
Cucsa.011300
I
0.828
Cucsa.098680
Cucumis sativus
Cucsa.098680
I
0.838
Cucsa.178830
Cucumis sativus
Cucsa.178830
I
0.707
Cucsa.196600
Cucumis sativus
Cucsa.196600
I
0.889
Cucsa.339980
Cucumis sativus
Cucsa.339980
I
0.818
Eucgr.C02148
Eucalyptus grandis
Eucgr.C02148
I
0.707
Eucgr.I01750
Eucalyptus grandis
Eucgr.I01750
I
0.838
Eucgr.J02237
Eucalyptus grandis
Eucgr.J02237
I
0.838
Eucgr.K02809
Eucalyptus grandis
Eucgr.K02809
I
0.848
evm.TU.supercontig_108.62
Carica papaya
evm.TU.supercontig_108.62
I
0.808
evm.TU.supercontig_110.17
Carica papaya
evm.TU.supercontig_110.17
I
0.889
evm.TU.supercontig_39.110
Carica papaya
evm.TU.supercontig_39.110
I
0.707
F775_25656
Aegilops tauschii
F775_25656
I
0.828
F775_33210
Aegilops tauschii
F775_33210
I
0.767
gene21541-v1.0-hybrid
Fragaria vesca
gene21541-v1.0-hybrid
I
0.707
gene28478-v1.0-hybrid
Fragaria vesca
gene28478-v1.0-hybrid
I
0.838
gene31797-v1.0-hybrid
Fragaria vesca
gene31797-v1.0-hybrid
I
0.869
GLYMA04G36080
Glycine max
GLYMA04G36080
I
0.879
GLYMA05G02530
Glycine max
GLYMA05G02530
I
0.889
GLYMA05G08870
Glycine max
GLYMA05G08870
I
0.828
GLYMA06G18861
Glycine max
GLYMA06G18861
I
0.889
GLYMA13G26020
Glycine max
GLYMA13G26020
I
0.707
GLYMA15G36310
Glycine max
GLYMA15G36310
I
0.707
GLYMA16G07770
Glycine max
GLYMA16G07770
I
0.828
GLYMA16G09720
Glycine max
GLYMA16G09720
I
0.707
GLYMA17G09380
Glycine max
GLYMA17G09380
I
0.889
GLYMA19G00390
Glycine max
GLYMA19G00390
I
0.828
GLYMA19G12650
Glycine max
GLYMA19G12650
I
0.818
Gorai.006G033100
Gossypium raimondii
Gorai.006G033100
I
0.798
Gorai.007G075700
Gossypium raimondii
Gorai.007G075700
I
0.788
Gorai.012G063800
Gossypium raimondii
Gorai.012G063800
I
0.798
GSMUA_Achr10G20760_001
Musa acuminata
GSMUA_Achr10G20760_001
I
0.725
gw1.12.172.1
Physcomitrella patens
gw1.12.172.1
I
0.717
gw1.170.36.1
Physcomitrella patens
gw1.170.36.1
I
0.737
gw1.170.40.1
Physcomitrella patens
gw1.170.40.1
I
0.737
gw1.71.84.1
Physcomitrella patens
gw1.71.84.1
I
0.727
LBD25
Arabidopsis thaliana
AT3G27650
I
0.747
LBD25
Arabidopsis lyrata
fgenesh2_kg.5__545__AT3G27650.1
I
0.747
LBD25
Vitis vinifera
VIT_14s0066g00680
I
0.818
LBD6
Arabidopsis thaliana
AT1G65620
D
0.707
LjSGA_017893.1
Lotus japonicus
LjSGA_017893.1
I
0.753
LjSGA_042891.1
Lotus japonicus
LjSGA_042891.1
I
0.828
LOB
Arabidopsis thaliana
AT5G63090
D
0.889
LOB
Arabidopsis lyrata
scaffold_802995.1
I
0.889
LOB
Vitis vinifera
VIT_17s0000g09010
I
0.899
LPERR01G04140
Leersia perrieri
LPERR01G04140
I
0.848
Lus10001139.g
Linum usitatissimum
Lus10001139.g
I
0.759
Lus10022264.g
Linum usitatissimum
Lus10022264.g
I
0.848
Lus10027676.g
Linum usitatissimum
Lus10027676.g
I
0.899
Lus10039940.g
Linum usitatissimum
Lus10039940.g
I
0.889
MDP0000130659
Malus domestica
MDP0000130659
I
0.889
MDP0000254288
Malus domestica
MDP0000254288
I
0.889
MDP0000273432
Malus domestica
MDP0000273432
I
0.707
MDP0000643326
Malus domestica
MDP0000643326
I
0.717
MDP0000848210
Malus domestica
MDP0000848210
I
0.818
mgf003146m
Mimulus guttatus
mgf003146m
I
0.758
mgf014755m
Mimulus guttatus
mgf014755m
I
0.707
mgf016361m
Mimulus guttatus
mgf016361m
I
0.818
mgf024603m
Mimulus guttatus
mgf024603m
I
0.869
MTR_3g077240
Medicago truncatula
MTR_3g077240
I
0.869
MTR_4g105170
Medicago truncatula
MTR_4g105170
I
0.879
MTR_6g005070
Medicago truncatula
MTR_6g005070
I
0.798
MTR_6g005080
Medicago truncatula
MTR_6g005080
I
0.778
MTR_7g033800
Medicago truncatula
MTR_7g033800
I
0.828
MTR_8g040900
Medicago truncatula
MTR_8g040900
I
0.707
OB01G14220
Oryza brachyantha
OB01G14220
I
0.848
OBART01G04470
Oryza barthii
OBART01G04470
I
0.838
OGLUM01G04900
Oryza glumaepatula
OGLUM01G04900
I
0.838
OLONG_009404
Oryza longistaminata
OLONG_009404
I
0.709
OMERI01G04420
Oryza meridionalis
OMERI01G04420
I
0.848
ONIVA01G04930
Oryza nivara
ONIVA01G04930
I
0.838
orange1.1g027472m.g
Citrus sinensis
orange1.1g027472m.g
I
0.707
orange1.1g031572m.g
Citrus sinensis
orange1.1g031572m.g
I
0.798
orange1.1g036845m.g
Citrus sinensis
orange1.1g036845m.g
I
0.848
ORGLA01G0040900
Oryza glaberrima
ORGLA01G0040900
I
0.838
ORUFI01G04670
Oryza rufipogon
ORUFI01G04670
I
0.838
OS01G0169400
Oryza sativa
OS01G0169400
I
0.838
Pavir.Eb00458
Panicum virgatum
Pavir.Eb00458
I
0.848
Pavir.J38993
Panicum virgatum
Pavir.J38993
I
0.848
PGSC0003DMG400000974
Solanum tuberosum
PGSC0003DMG400000974
I
0.717
PGSC0003DMG400006914
Solanum tuberosum
PGSC0003DMG400006914
I
0.788
PGSC0003DMG400012629
Solanum tuberosum
PGSC0003DMG400012629
I
0.818
PGSC0003DMG400018112
Solanum tuberosum
PGSC0003DMG400018112
I
0.889
PK18922.1
Cannabis sativa
PK18922.1
I
0.825
PK21510.1
Cannabis sativa
PK21510.1
I
0.848
PK26472.1
Cannabis sativa
PK26472.1
I
0.838
PK29334.1
Cannabis sativa
PK29334.1
I
0.703
Pm015649
Prunus mume
Pm015649
I
0.838
Pm024312
Prunus mume
Pm024312
I
0.879
POPTR_0001s35280
Populus trichocarpa
POPTR_0001s35280
I
0.838
POPTR_0012s08540
Populus trichocarpa
POPTR_0012s08540
I
0.879
POPTR_0015s09370
Populus trichocarpa
POPTR_0015s09370
I
0.879
PRUPE_ppa018381mg
Prunus persica
PRUPE_ppa018381mg
I
0.838
PRUPE_ppa023059mg
Prunus persica
PRUPE_ppa023059mg
I
0.879
PRUPE_ppa027059mg
Prunus persica
PRUPE_ppa027059mg
I
0.707
SapurV1A.0011s0490
Salix purpurea
SapurV1A.0011s0490
I
0.879
SapurV1A.1247s0030
Salix purpurea
SapurV1A.1247s0030
I
0.879
SapurV1A.1328s0080
Salix purpurea
SapurV1A.1328s0080
I
0.838
Sb03g004590
Sorghum bicolor
Sb03g004590
I
0.848
SELMODRAFT_59324
Selaginella moellendorffii
SELMODRAFT_59324
I
0.768
SELMODRAFT_68988
Selaginella moellendorffii
SELMODRAFT_68988
I
0.768
Si002632m.g
Setaria italica
Si002632m.g
I
0.848
Solyc02g067800.2
Solanum lycopersicum
Solyc02g067800.2
I
0.788
Solyc02g086480.1
Solanum lycopersicum
Solyc02g086480.1
I
0.798
Solyc03g063140.2
Solanum lycopersicum
Solyc03g063140.2
I
0.717
Solyc03g112430.1
Solanum lycopersicum
Solyc03g112430.1
I
0.879
Solyc06g071660.1
Solanum lycopersicum
Solyc06g071660.1
I
0.980
Solyc11g008830.1
Solanum lycopersicum
Solyc11g008830.1
I
0.707
TCM_012190
Theobroma cacao
TCM_012190
I
0.889
TCM_016952
Theobroma cacao
TCM_016952
I
0.818
TCM_024217
Theobroma cacao
TCM_024217
I
0.707
Thhalv10004979m.g
Eutrema salsugineum
Thhalv10004979m.g
I
0.889
Thhalv10005120m.g
Eutrema salsugineum
Thhalv10005120m.g
I
0.747
Thhalv10019572m.g
Eutrema salsugineum
Thhalv10019572m.g
I
0.707
Traes_1DL_1290B6A52
Triticum aestivum
Traes_1DL_1290B6A52
I
0.723
TRIUR3_10339
Triticum urartu
TRIUR3_10339
I
0.729
VIT_00s0215g00010
Vitis vinifera
VIT_00s0215g00010
I
0.796