CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0002s12020
(
Populus trichocarpa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
POPTR_0002s12020
T245861_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0002s12020.1
LOB
2
104
SCNGCRVLRKGCSETCVLRSCLHWITNPEAQGNATLFLAKFFGRSDLMSLISAVPEAQRPALFQSLLFEACGRTVNPVNGVVGLLWSGNWHMCQEAVETVLSG
Links
Other
LOB
family TFs
Other
Populus trichocarpa
TFs
231 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava22449.valid.m1
Manihot esculenta
cassava22449.valid.m1
N
0.949
30170.m013752
Ricinus communis
30170.m013752
N
0.939
cassava35733.valid.m1
Manihot esculenta
cassava35733.valid.m1
N
0.939
SapurV1A.0845s0090
Salix purpurea
SapurV1A.0845s0090
N
0.939
SapurV1A.2860s0030
Salix purpurea
SapurV1A.2860s0030
N
0.939
PRUPE_ppa014964mg
Prunus persica
PRUPE_ppa014964mg
N
0.918
Pm005389
Prunus mume
Pm005389
N
0.918
PK25954.1
Cannabis sativa
PK25954.1
N
0.913
POPTR_0014s01770
Populus trichocarpa
POPTR_0014s01770
N
0.909
SapurV1A.0476s0230
Salix purpurea
SapurV1A.0476s0230
N
0.909
TCM_034722
Theobroma cacao
TCM_034722
N
0.888
evm.TU.supercontig_21.100
Carica papaya
evm.TU.supercontig_21.100
N
0.888
Gorai.009G218800
Gossypium raimondii
Gorai.009G218800
N
0.888
Gorai.010G025100
Gossypium raimondii
Gorai.010G025100
N
0.888
PK03977.1
Cannabis sativa
PK03977.1
N
0.888
Ciclev10003746m.g
Citrus clementina
Ciclev10003746m.g
N
0.878
MDP0000487015
Malus domestica
MDP0000487015
N
0.878
MDP0000747679
Malus domestica
MDP0000747679
N
0.878
orange1.1g029809m.g
Citrus sinensis
orange1.1g029809m.g
N
0.878
Cla020920
Citrullus lanatus
Cla020920
N
0.867
gene02557-v1.0-hybrid
Fragaria vesca
gene02557-v1.0-hybrid
N
0.867
29661.m000902
Ricinus communis
29661.m000902
N
0.857
cassava226.valid.m1
Manihot esculenta
cassava226.valid.m1
N
0.857
cassava7497.valid.m1
Manihot esculenta
cassava7497.valid.m1
N
0.857
Gorai.007G056300
Gossypium raimondii
Gorai.007G056300
N
0.857
MDP0000794101
Malus domestica
MDP0000794101
N
0.857
Eucgr.F00115
Eucalyptus grandis
Eucgr.F00115
N
0.856
GLYMA01G40010
Glycine max
GLYMA01G40010
N
0.847
GLYMA11G05280
Glycine max
GLYMA11G05280
N
0.847
GLYMA14G09750
Glycine max
GLYMA14G09750
N
0.847
TCM_000766
Theobroma cacao
TCM_000766
N
0.847
evm.TU.supercontig_6.40
Carica papaya
evm.TU.supercontig_6.40
N
0.847
Gorai.007G222000
Gossypium raimondii
Gorai.007G222000
N
0.847
Lus10007758.g
Linum usitatissimum
Lus10007758.g
N
0.847
Lus10018697.g
Linum usitatissimum
Lus10018697.g
N
0.847
AMTR_s00137p00087340
Amborella trichopoda
AMTR_s00137p00087340
N
0.837
MTR_4g095600
Medicago truncatula
MTR_4g095600
N
0.837
VIT_18s0001g09250
Vitis vinifera
VIT_18s0001g09250
N
0.837
Aquca_042_00143
Aquilegia coerulea
Aquca_042_00143
N
0.837
Cagra.10957s0002
Capsella grandiflora
Cagra.10957s0002
N
0.837
Carubv10005616m.g
Capsella rubella
Carubv10005616m.g
N
0.837
Eucgr.H02293
Eucalyptus grandis
Eucgr.H02293
N
0.837
Lus10011530.g
Linum usitatissimum
Lus10011530.g
N
0.837
Lus10019292.g
Linum usitatissimum
Lus10019292.g
N
0.837
PK29811.1
Cannabis sativa
PK29811.1
N
0.837
Cucsa.352730
Cucumis sativus
Cucsa.352730
N
0.835
PK03075.1
Cannabis sativa
PK03075.1
N
0.835
MDP0000591819
Malus domestica
MDP0000591819
N
0.833
GLYMA17G17540
Glycine max
GLYMA17G17540
N
0.827
MTR_5g015880
Medicago truncatula
MTR_5g015880
N
0.827
POPTR_0005s18900
Populus trichocarpa
POPTR_0005s18900
N
0.827
POPTR_0007s10010
Populus trichocarpa
POPTR_0007s10010
N
0.827
Ca_02208
Cicer arietinum
Ca_02208
N
0.827
Ca_09342
Cicer arietinum
Ca_09342
N
0.827
Ciclev10026374m.g
Citrus clementina
Ciclev10026374m.g
N
0.827
gene05722-v1.0-hybrid
Fragaria vesca
gene05722-v1.0-hybrid
N
0.827
Gorai.008G081100
Gossypium raimondii
Gorai.008G081100
N
0.827
orange1.1g026365m.g
Citrus sinensis
orange1.1g026365m.g
N
0.827
SapurV1A.0116s0210
Salix purpurea
SapurV1A.0116s0210
N
0.827
chr4.CM0128.270.nc
Lotus japonicus
chr4.CM0128.270.nc
N
0.827
GLYMA17G35440
Glycine max
GLYMA17G35440
N
0.825
Bo1g003550
Brassica oleracea
Bo1g003550
N
0.816
Bra011772
Brassica rapa
Bra011772
N
0.816
LBD39
Arabidopsis lyrata
fgenesh2_kg.7__297__AT4G37540.1
N
0.816
GLYMA05G22120
Glycine max
GLYMA05G22120
N
0.816
PGSC0003DMG400024936
Solanum tuberosum
PGSC0003DMG400024936
N
0.816
Solyc02g092550.2
Solanum lycopersicum
Solyc02g092550.2
N
0.816
Cla014228
Citrullus lanatus
Cla014228
N
0.816
Cucsa.103050
Cucumis sativus
Cucsa.103050
N
0.816
SapurV1A.0336s0110
Salix purpurea
SapurV1A.0336s0110
N
0.816
Thhalv10026086m.g
Eutrema salsugineum
Thhalv10026086m.g
N
0.816
MDP0000581845
Malus domestica
MDP0000581845
N
0.810
LBD38
Arabidopsis thaliana
AT3G49940
N
0.806
LBD39
Arabidopsis thaliana
AT4G37540
N
0.806
Bo7g118580
Brassica oleracea
Bo7g118580
N
0.806
Bra017831
Brassica rapa
Bra017831
N
0.806
GSMUA_Achr3G18860_001
Musa acuminata
GSMUA_Achr3G18860_001
N
0.806
GSMUA_Achr3G30130_001
Musa acuminata
GSMUA_Achr3G30130_001
N
0.806
LBD38
Arabidopsis lyrata
scaffold_502015.1
N
0.806
SELMODRAFT_105005
Selaginella moellendorffii
SELMODRAFT_105005
N
0.806
SELMODRAFT_27399
Selaginella moellendorffii
SELMODRAFT_27399
N
0.806
VIT_03s0091g00670
Vitis vinifera
VIT_03s0091g00670
N
0.806
mgf016064m
Mimulus guttatus
mgf016064m
N
0.806
Bostr.7867s1612
Boechera stricta
Bostr.7867s1612
N
0.806
Cagra.4491s0014
Capsella grandiflora
Cagra.4491s0014
N
0.806
Carubv10017944m.g
Capsella rubella
Carubv10017944m.g
N
0.806
Bo7g099150
Brassica oleracea
Bo7g099150
N
0.796
Bo9g018500
Brassica oleracea
Bo9g018500
N
0.796
Bra012913
Brassica rapa
Bra012913
N
0.796
mgf007319m
Mimulus guttatus
mgf007319m
N
0.796
Bostr.6864s0247
Boechera stricta
Bostr.6864s0247
N
0.796
Thhalv10010666m.g
Eutrema salsugineum
Thhalv10010666m.g
N
0.796
MDP0000151330
Malus domestica
MDP0000151330
N
0.794
MDP0000239820
Malus domestica
MDP0000239820
N
0.794
PK15647.1
Cannabis sativa
PK15647.1
N
0.790
Bo8g079200
Brassica oleracea
Bo8g079200
N
0.786
Bra036040
Brassica rapa
Bra036040
N
0.786
VIT_07s0129g00330
Vitis vinifera
VIT_07s0129g00330
N
0.786
gw1.167.132.1
Physcomitrella patens
gw1.167.132.1
N
0.786
evm.TU.supercontig_106.63
Carica papaya
evm.TU.supercontig_106.63
N
0.786
AMTR_s00137p00051070
Amborella trichopoda
AMTR_s00137p00051070
N
0.776
BGIOSGA010454
Oryza indica
BGIOSGA010454
N
0.776
Bo2g168020
Brassica oleracea
Bo2g168020
N
0.776
Bo5g132850
Brassica oleracea
Bo5g132850
N
0.776
Bo7g063630
Brassica oleracea
Bo7g063630
N
0.776
Bo9g019150
Brassica oleracea
Bo9g019150
N
0.776
Bra012164
Brassica rapa
Bra012164
N
0.776
Bra031833
Brassica rapa
Bra031833
N
0.776
Bra037847
Brassica rapa
Bra037847
N
0.776
LBD37
Arabidopsis lyrata
fgenesh2_kg.8__2670__AT5G67420.1
N
0.776
GRMZM2G044902
Zea mays
GRMZM2G044902
N
0.776
GSMUA_Achr7G26260_001
Musa acuminata
GSMUA_Achr7G26260_001
N
0.776
OBART03G22820
Oryza barthii
OBART03G22820
N
0.776
OLONG_015384
Oryza longistaminata
OLONG_015384
N
0.776
OMERI03G20600
Oryza meridionalis
OMERI03G20600
N
0.776
ONIVA03G24370
Oryza nivara
ONIVA03G24370
N
0.776
ORGLA03G0213800
Oryza glaberrima
ORGLA03G0213800
N
0.776
ORUFI03G23490
Oryza rufipogon
ORUFI03G23490
N
0.776
OS03G0445700
Oryza sativa
OS03G0445700
N
0.776
PGSC0003DMG400021509
Solanum tuberosum
PGSC0003DMG400021509
N
0.776
Solyc04g077990.2
Solanum lycopersicum
Solyc04g077990.2
N
0.776
e_gw1.19.226.1
Physcomitrella patens
e_gw1.19.226.1
N
0.776
gw1.41.215.1
Physcomitrella patens
gw1.41.215.1
N
0.776
Bostr.0568s0168
Boechera stricta
Bostr.0568s0168
N
0.776
Cagra.0342s0030
Capsella grandiflora
Cagra.0342s0030
N
0.776
Thhalv10004811m.g
Eutrema salsugineum
Thhalv10004811m.g
N
0.776
SELMODRAFT_37566
Selaginella moellendorffii
SELMODRAFT_37566
N
0.773
SELMODRAFT_37570
Selaginella moellendorffii
SELMODRAFT_37570
N
0.773
LBD37
Arabidopsis thaliana
AT5G67420
N
0.765
OGLUM03G23580
Oryza glumaepatula
OGLUM03G23580
N
0.765
OPUNC03G21330
Oryza punctata
OPUNC03G21330
N
0.765
SELMODRAFT_61520
Selaginella moellendorffii
SELMODRAFT_61520
N
0.765
Carubv10027507m.g
Capsella rubella
Carubv10027507m.g
N
0.765
Pavir.J18418
Panicum virgatum
Pavir.J18418
N
0.765
Sb01g031790
Sorghum bicolor
Sb01g031790
N
0.763
SELMODRAFT_37532
Selaginella moellendorffii
SELMODRAFT_37532
N
0.763
LjSGA_036652.1
Lotus japonicus
LjSGA_036652.1
N
0.759
GSMUA_Achr4G14150_001
Musa acuminata
GSMUA_Achr4G14150_001
N
0.755
GSMUA_Achr6G07770_001
Musa acuminata
GSMUA_Achr6G07770_001
N
0.755
LPERR03G19360
Leersia perrieri
LPERR03G19360
N
0.755
OB03G31560
Oryza brachyantha
OB03G31560
N
0.755
PGSC0003DMG400025752
Solanum tuberosum
PGSC0003DMG400025752
N
0.755
Si031011m.g
Setaria italica
Si031011m.g
N
0.755
Ciclev10029274m.g
Citrus clementina
Ciclev10029274m.g
N
0.755
Pavir.Bb01170
Panicum virgatum
Pavir.Bb01170
N
0.755
Pavir.Ia03080
Panicum virgatum
Pavir.Ia03080
N
0.755
LPERR07G17890
Leersia perrieri
LPERR07G17890
N
0.750
Solyc01g107190.2
Solanum lycopersicum
Solyc01g107190.2
N
0.745
estExt_gwp_gw1.C_2030014
Physcomitrella patens
estExt_gwp_gw1.C_2030014
N
0.745
28152.m000905
Ricinus communis
28152.m000905
N
0.742
cassava9459.m1
Manihot esculenta
cassava9459.m1
N
0.742
POPTR_0009s09270
Populus trichocarpa
POPTR_0009s09270
N
0.735
Sb02g038030
Sorghum bicolor
Sb02g038030
N
0.735
Traes_2BS_5DF7F4FEE
Triticum aestivum
Traes_2BS_5DF7F4FEE
N
0.735
Eucgr.G01261
Eucalyptus grandis
Eucgr.G01261
N
0.735
Pavir.Ba01055
Panicum virgatum
Pavir.Ba01055
N
0.735
SapurV1A.0019s0260
Salix purpurea
SapurV1A.0019s0260
N
0.735
GLYMA20G26910
Glycine max
GLYMA20G26910
N
0.732
OPUNC07G19440
Oryza punctata
OPUNC07G19440
N
0.732
OPUNC07G19460
Oryza punctata
OPUNC07G19460
N
0.732
mgf016023m
Mimulus guttatus
mgf016023m
N
0.732
Pm002404
Prunus mume
Pm002404
N
0.726
Traes_4BL_D44ACD58E
Triticum aestivum
Traes_4BL_D44ACD58E
N
0.725
BGIOSGA026049
Oryza indica
BGIOSGA026049
N
0.724
GRMZM2G177110
Zea mays
GRMZM2G177110
N
0.724
OBART07G20600
Oryza barthii
OBART07G20600
N
0.724
OGLUM07G20380
Oryza glumaepatula
OGLUM07G20380
N
0.724
OMERI07G17270
Oryza meridionalis
OMERI07G17270
N
0.724
ONIVA07G19050
Oryza nivara
ONIVA07G19050
N
0.724
ORGLA07G0157700
Oryza glaberrima
ORGLA07G0157700
N
0.724
ORUFI07G21460
Oryza rufipogon
ORUFI07G21460
N
0.724
OS07G0589000
Oryza sativa
OS07G0589000
N
0.724
POPTR_0001s30280
Populus trichocarpa
POPTR_0001s30280
N
0.724
PRUPE_ppa022806mg
Prunus persica
PRUPE_ppa022806mg
N
0.724
Traes_2AS_942884399
Triticum aestivum
Traes_2AS_942884399
N
0.724
Pm021281
Prunus mume
Pm021281
N
0.724
Aquca_017_00034
Aquilegia coerulea
Aquca_017_00034
N
0.724
gene25541-v1.0-hybrid
Fragaria vesca
gene25541-v1.0-hybrid
N
0.724
MDP0000139025
Malus domestica
MDP0000139025
N
0.724
Pavir.Ea00650
Panicum virgatum
Pavir.Ea00650
N
0.724
BRADI1G22920
Brachypodium distachyon
BRADI1G22920
N
0.714
GLYMA04G04750
Glycine max
GLYMA04G04750
N
0.714
GLYMA10G40421
Glycine max
GLYMA10G40421
N
0.714
GLYMA13G07590
Glycine max
GLYMA13G07590
N
0.714
GSMUA_Achr9G00580_001
Musa acuminata
GSMUA_Achr9G00580_001
N
0.714
Sb03g007270
Sorghum bicolor
Sb03g007270
N
0.714
Si002412m.g
Setaria italica
Si002412m.g
N
0.714
Si022660m.g
Setaria italica
Si022660m.g
N
0.714
TCM_019459
Theobroma cacao
TCM_019459
N
0.714
cassava60.valid.m1
Manihot esculenta
cassava60.valid.m1
N
0.714
cassava6185.valid.m1
Manihot esculenta
cassava6185.valid.m1
N
0.714
PK03169.1
Cannabis sativa
PK03169.1
N
0.714
MLOC_58304
Hordeum vulgare
MLOC_58304
N
0.707
Traes_2AL_450404EA6
Triticum aestivum
Traes_2AL_450404EA6
N
0.707
Traes_2BL_3A840DB921
Triticum aestivum
Traes_2BL_3A840DB921
N
0.707
Traes_2DL_9D8B5B436
Triticum aestivum
Traes_2DL_9D8B5B436
N
0.707
AMTR_s00079p00088960
Amborella trichopoda
AMTR_s00079p00088960
N
0.704
LBD41
Arabidopsis thaliana
AT3G02550
N
0.704
BGIOSGA002703
Oryza indica
BGIOSGA002703
N
0.704
LBD41
Arabidopsis lyrata
fgenesh2_kg.3__191__AT3G02550.1
N
0.704
GLYMA08G48040
Glycine max
GLYMA08G48040
N
0.704
GLYMA19G06280
Glycine max
GLYMA19G06280
N
0.704
GRMZM2G132693
Zea mays
GRMZM2G132693
N
0.704
GSMUA_Achr3G29520_001
Musa acuminata
GSMUA_Achr3G29520_001
N
0.704
GSMUA_Achr4G13790_001
Musa acuminata
GSMUA_Achr4G13790_001
N
0.704
GSMUA_Achr9G21360_001
Musa acuminata
GSMUA_Achr9G21360_001
N
0.704
LPERR01G01830
Leersia perrieri
LPERR01G01830
N
0.704
MLOC_11838
Hordeum vulgare
MLOC_11838
N
0.704
MTR_7g007010
Medicago truncatula
MTR_7g007010
N
0.704
OB01G11830
Oryza brachyantha
OB01G11830
N
0.704
OBART01G01940
Oryza barthii
OBART01G01940
N
0.704
OGLUM01G02100
Oryza glumaepatula
OGLUM01G02100
N
0.704
OLONG_008015
Oryza longistaminata
OLONG_008015
N
0.704
ONIVA01G02110
Oryza nivara
ONIVA01G02110
N
0.704
OPUNC01G01670
Oryza punctata
OPUNC01G01670
N
0.704
ORGLA01G0016600
Oryza glaberrima
ORGLA01G0016600
N
0.704
ORUFI01G02010
Oryza rufipogon
ORUFI01G02010
N
0.704
PGSC0003DMG400012653
Solanum tuberosum
PGSC0003DMG400012653
N
0.704
Sb09g030780
Sorghum bicolor
Sb09g030780
N
0.704
Solyc02g085910.2
Solanum lycopersicum
Solyc02g085910.2
N
0.704
TCM_007211
Theobroma cacao
TCM_007211
N
0.704
Cla007208
Citrullus lanatus
Cla007208
N
0.704
Cucsa.031350
Cucumis sativus
Cucsa.031350
N
0.704
Aquca_026_00293
Aquilegia coerulea
Aquca_026_00293
N
0.704
Ciclev10013705m.g
Citrus clementina
Ciclev10013705m.g
N
0.704
Gorai.005G232500
Gossypium raimondii
Gorai.005G232500
N
0.704
orange1.1g022591m.g
Citrus sinensis
orange1.1g022591m.g
N
0.704
Pavir.J11724
Panicum virgatum
Pavir.J11724
N
0.704
chr1.CM0088.550.nd
Lotus japonicus
chr1.CM0088.550.nd
N
0.704
chr5.CM0200.600.nd
Lotus japonicus
chr5.CM0200.600.nd
N
0.704
LPERR07G17900
Leersia perrieri
LPERR07G17900
N
0.703