POPTR_0008s04350 (Populus trichocarpa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 POPTR_0008s04350 T245877_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.727 0.727
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s04350.1 LOB 68 166

Links

Other LOB family TFs
Other Populus trichocarpa TFs

332 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_05505 Capronia coronata A1O1_05505 I
A1O3_09089 Capronia epimyces A1O3_09089 I
A1O5_02882 Cladophialophora psammophila A1O5_02882 I
A1O7_06770 Cladophialophora yegresii A1O7_06770 I
A1O9_01370 Exophiala aquamarina A1O9_01370 I
ARB_02363 Arthroderma benhamiae ARB_02363 I
BDDG_01384 Blastomyces dermatitidis BDDG_01384 I
ACLA_072680 Aspergillus clavatus CADACLAG00007101 I
CADAFLAG00007043 Aspergillus flavus CADAFLAG00007043 I
AFUA_2G14800 Aspergillus fumigatus CADAFUAG00004490 I
ANIA_07553 Aspergillus nidulans CADANIAG00000659 D
CADAORAG00008796 Aspergillus oryzae CADAORAG00008796 I
ATEG_07822 Aspergillus terreus CADATEAG00002604 I
NFIA_090030 Neosartorya fischeri CADNFIAG00007681 I
CIMG_02390 Coccidioides immitis CIMG_02390 I
CPC735_040250 Coccidioides posadasii CPC735_040250 I
EPUS_00980 Endocarpon pusillum EPUS_00980 I
EURHEDRAFT_466620 Aspergillus ruber EURHEDRAFT_466620 I
fgenesh1_pm.00815_#_161 Aspergillus carbonarius fgenesh1_pm.00815_#_161 I
G647_03336 Cladophialophora carrionii G647_03336 I
H101_07404 Trichophyton interdigitale H101_07404 I
H102_06799 Trichophyton rubrum H102_06799 I
H105_06838 Trichophyton soudanense H105_06838 I
HMPREF1120_07727 Exophiala dermatitidis HMPREF1120_07727 I
HMPREF1541_08225 Cyphellophora europaea HMPREF1541_08225 I
MCYG_07496 Arthroderma otae MCYG_07496 I
MCYG_07496 Microsporum canis MCYG_07496 I
MGYG_05268 Microsporum gypseum MGYG_05268 I
PAAG_01669 Paracoccidioides sp lutzii PAAG_01669 I
PABG_11809 Paracoccidioides brasiliensis PABG_11809 I
Pc12g01260 Penicillium chrysogenum Pc12g01260 I
PCH_Pc12g01260 Penicillium rubens PCH_Pc12g01260 I
PDE_06375 Penicillium oxalicum PDE_06375 I
PDIP_04140 Penicillium digitatum PDIP_04140 I
PEX1_057330 Penicillium expansum PEX1_057330 I
PITC_021050 Penicillium italicum PITC_021050 I
PMAA_100990 Penicillium marneffei PMAA_100990 I
PMAA_100990 Talaromyces marneffei PMAA_100990 I
PV04_07191 Capronia semiimmersa PV04_07191 I
PV05_09605 Exophiala xenobiotica PV05_09605 I
PV06_05419 Exophiala oligosperma PV06_05419 I
PV07_10892 Cladophialophora immunda PV07_10892 I
PV08_01890 Exophiala spinifera PV08_01890 I
PV10_03132 Exophiala mesophila PV10_03132 I
PV11_09241 Exophiala sideris PV11_09241 I
TRV_01981 Trichophyton verrucosum TRV_01981 I
TSTA_057660 Talaromyces stipitatus TSTA_057660 I
U727_0043136061 Penicillium solitum U727_0043136061 I
UREG_01372 Uncinocarpus reesii UREG_01372 I
Z517_09982 Fonsecaea pedrosoi Z517_09982 I
Z518_09094 Rhinocladiella mackenziei Z518_09094 I
Z519_07413 Cladophialophora bantiana Z519_07413 I