CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0008s04350
(
Populus trichocarpa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
POPTR_0008s04350
T245877_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.727
0.727
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.707
0.707
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0008s04350.1
LOB
68
166
PCAACKILRRRCVDKCVLAPYFPPSEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAISQLQKQVSDLQAQLAKAQA
Links
Other
LOB
family TFs
Other
Populus trichocarpa
TFs
332 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A1O1_05505
Capronia coronata
A1O1_05505
I
A1O3_09089
Capronia epimyces
A1O3_09089
I
A1O5_02882
Cladophialophora psammophila
A1O5_02882
I
A1O7_06770
Cladophialophora yegresii
A1O7_06770
I
A1O9_01370
Exophiala aquamarina
A1O9_01370
I
ARB_02363
Arthroderma benhamiae
ARB_02363
I
BDDG_01384
Blastomyces dermatitidis
BDDG_01384
I
ACLA_072680
Aspergillus clavatus
CADACLAG00007101
I
CADAFLAG00007043
Aspergillus flavus
CADAFLAG00007043
I
AFUA_2G14800
Aspergillus fumigatus
CADAFUAG00004490
I
ANIA_07553
Aspergillus nidulans
CADANIAG00000659
D
CADAORAG00008796
Aspergillus oryzae
CADAORAG00008796
I
ATEG_07822
Aspergillus terreus
CADATEAG00002604
I
NFIA_090030
Neosartorya fischeri
CADNFIAG00007681
I
CIMG_02390
Coccidioides immitis
CIMG_02390
I
CPC735_040250
Coccidioides posadasii
CPC735_040250
I
EPUS_00980
Endocarpon pusillum
EPUS_00980
I
EURHEDRAFT_466620
Aspergillus ruber
EURHEDRAFT_466620
I
fgenesh1_pm.00815_#_161
Aspergillus carbonarius
fgenesh1_pm.00815_#_161
I
G647_03336
Cladophialophora carrionii
G647_03336
I
H101_07404
Trichophyton interdigitale
H101_07404
I
H102_06799
Trichophyton rubrum
H102_06799
I
H105_06838
Trichophyton soudanense
H105_06838
I
HMPREF1120_07727
Exophiala dermatitidis
HMPREF1120_07727
I
HMPREF1541_08225
Cyphellophora europaea
HMPREF1541_08225
I
MCYG_07496
Arthroderma otae
MCYG_07496
I
MCYG_07496
Microsporum canis
MCYG_07496
I
MGYG_05268
Microsporum gypseum
MGYG_05268
I
PAAG_01669
Paracoccidioides sp lutzii
PAAG_01669
I
PABG_11809
Paracoccidioides brasiliensis
PABG_11809
I
Pc12g01260
Penicillium chrysogenum
Pc12g01260
I
PCH_Pc12g01260
Penicillium rubens
PCH_Pc12g01260
I
PDE_06375
Penicillium oxalicum
PDE_06375
I
PDIP_04140
Penicillium digitatum
PDIP_04140
I
PEX1_057330
Penicillium expansum
PEX1_057330
I
PITC_021050
Penicillium italicum
PITC_021050
I
PMAA_100990
Penicillium marneffei
PMAA_100990
I
PMAA_100990
Talaromyces marneffei
PMAA_100990
I
PV04_07191
Capronia semiimmersa
PV04_07191
I
PV05_09605
Exophiala xenobiotica
PV05_09605
I
PV06_05419
Exophiala oligosperma
PV06_05419
I
PV07_10892
Cladophialophora immunda
PV07_10892
I
PV08_01890
Exophiala spinifera
PV08_01890
I
PV10_03132
Exophiala mesophila
PV10_03132
I
PV11_09241
Exophiala sideris
PV11_09241
I
TRV_01981
Trichophyton verrucosum
TRV_01981
I
TSTA_057660
Talaromyces stipitatus
TSTA_057660
I
U727_0043136061
Penicillium solitum
U727_0043136061
I
UREG_01372
Uncinocarpus reesii
UREG_01372
I
Z517_09982
Fonsecaea pedrosoi
Z517_09982
I
Z518_09094
Rhinocladiella mackenziei
Z518_09094
I
Z519_07413
Cladophialophora bantiana
Z519_07413
I