CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0012s07390
(
Populus trichocarpa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
POPTR_0012s07390
T245893_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0012s07390.1
LOB
10
108
ACASCKYQRRKCSSECPLAPYFPSEQPKMFQNAHKLFGVRKILRILENLDYLQKEEAMRSIIYQSNIRDRFPVHGCLGIIYQLHFQIRQAEEELRAVYA
POPTR_0012s07390.2
LOB
10
108
ACASCKYQRRKCSSECPLAPYFPSEQPKMFQNAHKLFGVRKILRILENLDYLQKEEAMRSIIYQSNIRDRFPVHGCLGIIYQLHFQIRQAEEELRAVYA
Links
Other
LOB
family TFs
Other
Populus trichocarpa
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0138s0160
Salix purpurea
SapurV1A.0138s0160
N
0.929
SapurV1A.0161s0030
Salix purpurea
SapurV1A.0161s0030
N
0.859
POPTR_0015s07780
Populus trichocarpa
POPTR_0015s07780
N
0.848
cassava19740.m1
Manihot esculenta
cassava19740.m1
N
0.818
30147.m014053
Ricinus communis
30147.m014053
N
0.798
cassava35156.m1
Manihot esculenta
cassava35156.m1
N
0.788
Ciclev10021399m.g
Citrus clementina
Ciclev10021399m.g
N
0.758
evm.TU.supercontig_17.185
Carica papaya
evm.TU.supercontig_17.185
N
0.758
MDP0000216231
Malus domestica
MDP0000216231
N
0.717
TCM_030184
Theobroma cacao
TCM_030184
N
0.707
MDP0000153290
Malus domestica
MDP0000153290
N
0.707