CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0013s08040
(
Populus trichocarpa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
POPTR_0013s08040
T245897_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.818
0.818
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.818
0.818
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0013s08040.1
LOB
42
140
PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPQNQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLEAELNAVRN
Links
Other
LOB
family TFs
Other
Populus trichocarpa
TFs
165 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LBD13
Arabidopsis thaliana
AT2G30340
D
0.818
AMTR_s00007p00227160
Amborella trichopoda
AMTR_s00007p00227160
I
0.949
LBD15
Arabidopsis thaliana
AT2G40470
I
0.929
BGIOSGA004719
Oryza indica
BGIOSGA004719
I
0.848
BGIOSGA018747
Oryza indica
BGIOSGA018747
I
0.869
Bo3g034980
Brassica oleracea
Bo3g034980
I
0.919
Bo4g012620
Brassica oleracea
Bo4g012620
I
0.919
Bo4g059520
Brassica oleracea
Bo4g059520
I
0.818
Bo4g172950
Brassica oleracea
Bo4g172950
I
0.828
Bo4g190140
Brassica oleracea
Bo4g190140
I
0.816
Bo4g190210
Brassica oleracea
Bo4g190210
I
0.929
Bra000188
Brassica rapa
Bra000188
I
0.919
Bra004572
Brassica rapa
Bra004572
I
0.919
Bra016992
Brassica rapa
Bra016992
I
0.899
Bra018320
Brassica rapa
Bra018320
I
0.818
Bra021627
Brassica rapa
Bra021627
I
0.828
BRADI2G34520
Brachypodium distachyon
BRADI2G34520
I
0.828
BRADI2G53690
Brachypodium distachyon
BRADI2G53690
I
0.848
F775_25790
Aegilops tauschii
F775_25790
I
0.848
F775_33210
Aegilops tauschii
F775_33210
I
0.712
F775_52636
Aegilops tauschii
F775_52636
I
0.848
LBD13
Arabidopsis lyrata
fgenesh2_kg.4__1005__AT2G30340.1
I
0.828
LBD15
Arabidopsis lyrata
fgenesh2_kg.4__2164__AT2G40470.1
I
0.929
GLYMA02G40080
Glycine max
GLYMA02G40080
I
0.889
GLYMA04G39830
Glycine max
GLYMA04G39830
I
0.960
GLYMA06G15050
Glycine max
GLYMA06G15050
I
0.960
GLYMA14G38280
Glycine max
GLYMA14G38280
I
0.909
GRMZM2G025989
Zea mays
GRMZM2G025989
I
0.723
GRMZM2G092517
Zea mays
GRMZM2G092517
I
0.838
GRMZM5G868471
Zea mays
GRMZM5G868471
I
0.838
GSMUA_Achr11G08330_001
Musa acuminata
GSMUA_Achr11G08330_001
I
0.919
GSMUA_Achr5G07460_001
Musa acuminata
GSMUA_Achr5G07460_001
I
0.889
GSMUA_Achr7G22200_001
Musa acuminata
GSMUA_Achr7G22200_001
I
0.869
GSMUA_AchrUn_randomG14060_001
Musa acuminata
GSMUA_AchrUn_randomG14060_001
I
0.889
LPERR01G30700
Leersia perrieri
LPERR01G30700
I
0.848
LPERR05G04040
Leersia perrieri
LPERR05G04040
I
0.848
MLOC_16076
Hordeum vulgare
MLOC_16076
I
0.848
MLOC_56075
Hordeum vulgare
MLOC_56075
I
0.848
MTR_3g094690
Medicago truncatula
MTR_3g094690
I
0.919
MTR_5g075020
Medicago truncatula
MTR_5g075020
I
0.879
MTR_5g083230
Medicago truncatula
MTR_5g083230
I
0.707
MTR_5g083960
Medicago truncatula
MTR_5g083960
I
0.919
OB01G44400
Oryza brachyantha
OB01G44400
I
0.848
OB05G14280
Oryza brachyantha
OB05G14280
I
0.885
OBART01G35680
Oryza barthii
OBART01G35680
I
0.848
OBART05G04570
Oryza barthii
OBART05G04570
I
0.869
OGLUM01G39690
Oryza glumaepatula
OGLUM01G39690
I
0.848
OGLUM05G04450
Oryza glumaepatula
OGLUM05G04450
I
0.869
OLONG_000658
Oryza longistaminata
OLONG_000658
I
0.848
OLONG_007328
Oryza longistaminata
OLONG_007328
I
0.747
OMERI01G32750
Oryza meridionalis
OMERI01G32750
I
0.848
OMERI05G04500
Oryza meridionalis
OMERI05G04500
I
0.869
ONIVA01G40640
Oryza nivara
ONIVA01G40640
I
0.848
ONIVA05G04920
Oryza nivara
ONIVA05G04920
I
0.869
OPUNC01G34540
Oryza punctata
OPUNC01G34540
I
0.848
ORGLA01G0294900
Oryza glaberrima
ORGLA01G0294900
I
0.848
ORGLA05G0042200
Oryza glaberrima
ORGLA05G0042200
I
0.869
ORUFI01G39050
Oryza rufipogon
ORUFI01G39050
I
0.848
ORUFI05G04770
Oryza rufipogon
ORUFI05G04770
I
0.869
OS01G0825000
Oryza sativa
OS01G0825000
I
0.848
OS05G0165450
Oryza sativa
OS05G0165450
I
0.869
PGSC0003DMG400020562
Solanum tuberosum
PGSC0003DMG400020562
I
0.869
PGSC0003DMG400029080
Solanum tuberosum
PGSC0003DMG400029080
I
0.909
PGSC0003DMG400030461
Solanum tuberosum
PGSC0003DMG400030461
I
0.848
POPTR_0013s15220
Populus trichocarpa
POPTR_0013s15220
I
0.848
POPTR_0019s14790
Populus trichocarpa
POPTR_0019s14790
I
0.859
PRUPE_ppa011757mg
Prunus persica
PRUPE_ppa011757mg
I
0.960
PRUPE_ppa019397mg
Prunus persica
PRUPE_ppa019397mg
I
0.869
Sb03g038410
Sorghum bicolor
Sb03g038410
I
0.838
Sb09g004940
Sorghum bicolor
Sb09g004940
I
0.848
SELMODRAFT_26920
Selaginella moellendorffii
SELMODRAFT_26920
I
0.838
SELMODRAFT_37169
Selaginella moellendorffii
SELMODRAFT_37169
I
0.838
SELMODRAFT_48883
Selaginella moellendorffii
SELMODRAFT_48883
I
0.717
SELMODRAFT_58936
Selaginella moellendorffii
SELMODRAFT_58936
I
0.717
Si004575m.g
Setaria italica
Si004575m.g
I
0.848
Si012018m.g
Setaria italica
Si012018m.g
I
0.859
Si026864m.g
Setaria italica
Si026864m.g
I
0.717
Solyc06g007390.2
Solanum lycopersicum
Solyc06g007390.2
I
0.879
Solyc06g050430.2
Solanum lycopersicum
Solyc06g050430.2
I
0.909
Solyc06g082430.1
Solanum lycopersicum
Solyc06g082430.1
I
0.859
TCM_032557
Theobroma cacao
TCM_032557
I
0.707
TCM_042262
Theobroma cacao
TCM_042262
I
0.889
TCM_045438
Theobroma cacao
TCM_045438
I
0.960
Traes_1AS_43FB6A3CF
Triticum aestivum
Traes_1AS_43FB6A3CF
I
0.848
Traes_1BS_8F922CA93
Triticum aestivum
Traes_1BS_8F922CA93
I
0.848
Traes_1DS_BB8508CC6
Triticum aestivum
Traes_1DS_BB8508CC6
I
0.848
TRAES3BF078900060CFD_g
Triticum aestivum
TRAES3BF078900060CFD_g
I
0.838
TRIUR3_18328
Triticum urartu
TRIUR3_18328
I
0.863
TRIUR3_34193
Triticum urartu
TRIUR3_34193
I
0.848
LBD13
Vitis vinifera
VIT_06s0004g07790
I
0.848
LBD15
Vitis vinifera
VIT_13s0067g02380
I
0.960
Ca_04126
Cicer arietinum
Ca_04126
I
0.929
Ca_12420
Cicer arietinum
Ca_12420
I
0.919
Ca_15642
Cicer arietinum
Ca_15642
I
0.859
Cla006731
Citrullus lanatus
Cla006731
I
0.709
Cla007391
Citrullus lanatus
Cla007391
I
0.919
Pm000277
Prunus mume
Pm000277
I
0.869
Pm019028
Prunus mume
Pm019028
I
0.891
29729.m002335
Ricinus communis
29729.m002335
I
0.939
29957.m001411
Ricinus communis
29957.m001411
I
0.879
30169.m006340
Ricinus communis
30169.m006340
I
0.707
cassava15554.m1
Manihot esculenta
cassava15554.m1
I
0.960
cassava20848.m1
Manihot esculenta
cassava20848.m1
I
0.960
cassava31953.m1
Manihot esculenta
cassava31953.m1
I
0.859
Cucsa.144080
Cucumis sativus
Cucsa.144080
I
0.929
Cucsa.326100
Cucumis sativus
Cucsa.326100
I
0.859
gw1.156.75.1
Physcomitrella patens
gw1.156.75.1
I
0.889
gw1.9.232.1
Physcomitrella patens
gw1.9.232.1
I
0.889
mgf011471m
Mimulus guttatus
mgf011471m
I
0.889
mgf020556m
Mimulus guttatus
mgf020556m
I
0.879
Aquca_005_00169
Aquilegia coerulea
Aquca_005_00169
I
0.939
Bostr.15697s0446
Boechera stricta
Bostr.15697s0446
I
0.707
Bostr.23794s0013
Boechera stricta
Bostr.23794s0013
I
0.929
Bostr.24513s0205
Boechera stricta
Bostr.24513s0205
I
0.818
Cagra.0567s0001
Capsella grandiflora
Cagra.0567s0001
I
0.818
Cagra.1642s0010
Capsella grandiflora
Cagra.1642s0010
I
0.929
Carubv10024002m.g
Capsella rubella
Carubv10024002m.g
I
0.929
Carubv10024870m.g
Capsella rubella
Carubv10024870m.g
I
0.808
Ciclev10002348m.g
Citrus clementina
Ciclev10002348m.g
I
0.869
Ciclev10006113m.g
Citrus clementina
Ciclev10006113m.g
I
0.717
Ciclev10032684m.g
Citrus clementina
Ciclev10032684m.g
I
0.919
Eucgr.B04019
Eucalyptus grandis
Eucgr.B04019
I
0.879
Eucgr.G03121
Eucalyptus grandis
Eucgr.G03121
I
0.949
evm.TU.supercontig_19.92
Carica papaya
evm.TU.supercontig_19.92
I
0.939
evm.TU.supercontig_2.327
Carica papaya
evm.TU.supercontig_2.327
I
0.899
evm.TU.supercontig_331.6
Carica papaya
evm.TU.supercontig_331.6
I
0.851
gene21311-v1.0-hybrid
Fragaria vesca
gene21311-v1.0-hybrid
I
0.949
gene28137-v1.0-hybrid
Fragaria vesca
gene28137-v1.0-hybrid
I
0.879
Gorai.003G151800
Gossypium raimondii
Gorai.003G151800
I
0.869
Gorai.009G295000
Gossypium raimondii
Gorai.009G295000
I
0.960
Gorai.012G015900
Gossypium raimondii
Gorai.012G015900
I
0.929
Gorai.013G005900
Gossypium raimondii
Gorai.013G005900
I
0.939
Lus10009930.g
Linum usitatissimum
Lus10009930.g
I
0.879
Lus10024183.g
Linum usitatissimum
Lus10024183.g
I
0.879
Lus10029061.g
Linum usitatissimum
Lus10029061.g
I
0.798
Lus10034208.g
Linum usitatissimum
Lus10034208.g
I
0.808
MDP0000167580
Malus domestica
MDP0000167580
I
0.920
MDP0000278334
Malus domestica
MDP0000278334
I
0.939
orange1.1g027307m.g
Citrus sinensis
orange1.1g027307m.g
I
0.919
orange1.1g028221m.g
Citrus sinensis
orange1.1g028221m.g
I
0.869
orange1.1g044340m.g
Citrus sinensis
orange1.1g044340m.g
I
0.717
Pavir.Ca01098
Panicum virgatum
Pavir.Ca01098
I
0.838
Pavir.Ea03276
Panicum virgatum
Pavir.Ea03276
I
0.828
Pavir.Eb03580
Panicum virgatum
Pavir.Eb03580
I
0.848
Pavir.J00291
Panicum virgatum
Pavir.J00291
I
0.848
Pavir.J06256
Panicum virgatum
Pavir.J06256
I
0.707
Pavir.J13923
Panicum virgatum
Pavir.J13923
I
0.707
Pavir.J18260
Panicum virgatum
Pavir.J18260
I
0.707
SapurV1A.0085s0450
Salix purpurea
SapurV1A.0085s0450
I
0.707
SapurV1A.0215s0070
Salix purpurea
SapurV1A.0215s0070
I
0.859
SapurV1A.0222s0070
Salix purpurea
SapurV1A.0222s0070
I
0.848
Thhalv10017073m.g
Eutrema salsugineum
Thhalv10017073m.g
I
0.818
Thhalv10017905m.g
Eutrema salsugineum
Thhalv10017905m.g
I
0.919
PK03716.1
Cannabis sativa
PK03716.1
I
0.824
PK05388.1
Cannabis sativa
PK05388.1
I
0.857
PK17019.1
Cannabis sativa
PK17019.1
I
0.735
PK17217.1
Cannabis sativa
PK17217.1
I
0.960
PK21617.1
Cannabis sativa
PK21617.1
I
0.935
PK29334.1
Cannabis sativa
PK29334.1
I
0.703
chr1.CM0125.30.nd
Lotus japonicus
chr1.CM0125.30.nd
I
0.939
chr2.CM1032.110.nc
Lotus japonicus
chr2.CM1032.110.nc
I
0.919
LjSGA_040320.1
Lotus japonicus
LjSGA_040320.1
I
0.863
PDK_20s1387061g002
Phoenix dactylifera
PDK_20s1387061g002
I
0.828
PDK_20s1448121g001
Phoenix dactylifera
PDK_20s1448121g001
N
0.746
PDK_20s1537041g001
Phoenix dactylifera
PDK_20s1537041g001
N
0.780