POPTR_0013s08040 (Populus trichocarpa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 POPTR_0013s08040 T245897_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.818 0.818
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.818 0.818
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0013s08040.1 LOB 42 140

Links

Other LOB family TFs
Other Populus trichocarpa TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_25790 Aegilops tauschii F775_25790 I 0.848
F775_33210 Aegilops tauschii F775_33210 I 0.712
F775_52636 Aegilops tauschii F775_52636 I 0.848
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.949
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.939
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.828
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.929
LBD13 Arabidopsis thaliana AT2G30340 D 0.818
LBD15 Arabidopsis thaliana AT2G40470 I 0.929
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.707
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.929
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.818
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.828
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.848
Bo3g034980 Brassica oleracea Bo3g034980 I 0.919
Bo4g012620 Brassica oleracea Bo4g012620 I 0.919
Bo4g059520 Brassica oleracea Bo4g059520 I 0.818
Bo4g172950 Brassica oleracea Bo4g172950 I 0.828
Bo4g190140 Brassica oleracea Bo4g190140 I 0.816
Bo4g190210 Brassica oleracea Bo4g190210 I 0.929
Bra000188 Brassica rapa Bra000188 I 0.919
Bra004572 Brassica rapa Bra004572 I 0.919
Bra016992 Brassica rapa Bra016992 I 0.899
Bra018320 Brassica rapa Bra018320 I 0.818
Bra021627 Brassica rapa Bra021627 I 0.828
PK03716.1 Cannabis sativa PK03716.1 I 0.824
PK05388.1 Cannabis sativa PK05388.1 I 0.857
PK17019.1 Cannabis sativa PK17019.1 I 0.735
PK17217.1 Cannabis sativa PK17217.1 I 0.960
PK21617.1 Cannabis sativa PK21617.1 I 0.935
PK29334.1 Cannabis sativa PK29334.1 I 0.703
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.818
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.929
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.929
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.808
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.939
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.899
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.851
Ca_04126 Cicer arietinum Ca_04126 I 0.929
Ca_12420 Cicer arietinum Ca_12420 I 0.919
Ca_15642 Cicer arietinum Ca_15642 I 0.859
Cla006731 Citrullus lanatus Cla006731 I 0.709
Cla007391 Citrullus lanatus Cla007391 I 0.919
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.869
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.717
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.919
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.919
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.869
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.717
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.929
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.859
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.879
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.949
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.818
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.919
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.949
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.879
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.889
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.960
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.960
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.909
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.869
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.960
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.929
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.939
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.848
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.848
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.848
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.848
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.879
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.879
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.798
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.808
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.939
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.919
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.863
MDP0000167580 Malus domestica MDP0000167580 I 0.920
MDP0000278334 Malus domestica MDP0000278334 I 0.939
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.960
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.960
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.859
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.919
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.879
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.707
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.919
mgf011471m Mimulus guttatus mgf011471m I 0.889
mgf020556m Mimulus guttatus mgf020556m I 0.879
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.919
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.889
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.869
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.889
OBART01G35680 Oryza barthii OBART01G35680 I 0.848
OBART05G04570 Oryza barthii OBART05G04570 I 0.869
OB01G44400 Oryza brachyantha OB01G44400 I 0.848
OB05G14280 Oryza brachyantha OB05G14280 I 0.885
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.848
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.869
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.848
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.869
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.848
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.869
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.848
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.747
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.848
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.869
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.848
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.869
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.848
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.848
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.869
OS01G0825000 Oryza sativa OS01G0825000 I 0.848
OS05G0165450 Oryza sativa OS05G0165450 I 0.869
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.838
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.828
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.848
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.848
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.828
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.746
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.780
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.889
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.889
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.848
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.859
Pm000277 Prunus mume Pm000277 I 0.869
Pm019028 Prunus mume Pm019028 I 0.891
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.960
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.869
29729.m002335 Ricinus communis 29729.m002335 I 0.939
29957.m001411 Ricinus communis 29957.m001411 I 0.879
30169.m006340 Ricinus communis 30169.m006340 I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.859
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.848
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.838
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.838
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.717
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.717
Si004575m.g Setaria italica Si004575m.g I 0.848
Si012018m.g Setaria italica Si012018m.g I 0.859
Si026864m.g Setaria italica Si026864m.g I 0.717
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.879
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.909
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.859
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.869
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.909
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.848
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.838
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.848
TCM_032557 Theobroma cacao TCM_032557 I 0.707
TCM_042262 Theobroma cacao TCM_042262 I 0.889
TCM_045438 Theobroma cacao TCM_045438 I 0.960
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.848
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.848
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.848
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.838
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.863
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.848
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.848
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.960
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.723
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.838
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.838