Sb01g047000 (Sorghum bicolor)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Sb01g047000 T245963_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.737 0.737
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.737 0.737
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb01g047000.1 LOB 16 115

Links

Other LOB family TFs
Other Sorghum bicolor TFs

175 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD16 Arabidopsis thaliana AT2G42430 D 0.737
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.737
LBD29 Arabidopsis thaliana AT3G58190 I 0.717
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.758
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.758
BGIOSGA011866 Oryza indica BGIOSGA011866 I 0.899
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.747
Bo3g036030 Brassica oleracea Bo3g036030 I 0.707
Bo4g016000 Brassica oleracea Bo4g016000 I 0.737
Bo4g108600 Brassica oleracea Bo4g108600 I 0.717
Bo4g191530 Brassica oleracea Bo4g191530 I 0.737
Bo8g092560 Brassica oleracea Bo8g092560 I 0.737
Bra000257 Brassica rapa Bra000257 I 0.707
Bra004693 Brassica rapa Bra004693 I 0.737
Bra014581 Brassica rapa Bra014581 I 0.717
Bra016877 Brassica rapa Bra016877 I 0.727
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.758
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.707
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.758
F775_02052 Aegilops tauschii F775_02052 I 0.737
F775_22967 Aegilops tauschii F775_22967 I 0.727
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.727
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.707
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.717
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.707
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.717
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.707
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.717
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.768
GRMZM2G092483 Zea mays GRMZM2G092483 I 0.990
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.758
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.737
GSMUA_Achr11G02110_001 Musa acuminata GSMUA_Achr11G02110_001 I 0.747
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.737
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.768
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.717
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.717
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.737
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.727
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.737
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.758
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.747
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.768
LPERR03G03460 Leersia perrieri LPERR03G03460 I 0.889
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.758
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.737
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.758
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.756
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.783
OB02G44330 Oryza brachyantha OB02G44330 I 0.768
OB03G13880 Oryza brachyantha OB03G13880 I 0.909
OB03G13890 Oryza brachyantha OB03G13890 I 0.758
OB08G30680 Oryza brachyantha OB08G30680 I 0.747
OBART03G03820 Oryza barthii OBART03G03820 I 0.828
OBART03G03830 Oryza barthii OBART03G03830 I 0.758
OBART08G23860 Oryza barthii OBART08G23860 I 0.747
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.758
OGLUM03G03700 Oryza glumaepatula OGLUM03G03700 I 0.828
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.729
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.747
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.700
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.747
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.729
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.758
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.758
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.747
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.758
ONIVA03G03570 Oryza nivara ONIVA03G03570 I 0.828
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.758
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.747
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.747
OPUNC03G03510 Oryza punctata OPUNC03G03510 I 0.899
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.758
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.747
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.758
ORGLA03G0035800 Oryza glaberrima ORGLA03G0035800 I 0.899
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.758
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.747
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.758
ORUFI03G03540 Oryza rufipogon ORUFI03G03540 I 0.828
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.758
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.747
OS02G0820500 Oryza sativa OS02G0820500 I 0.758
OS03G0149000 Oryza sativa OS03G0149000 I 0.899
OS03G0149100 Oryza sativa OS03G0149100 I 0.758
OS08G0563400 Oryza sativa OS08G0563400 I 0.747
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.707
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.717
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.727
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.727
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.717
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.758
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.768
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.727
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.737
Si015156m.g Setaria italica Si015156m.g I 0.737
Si019578m.g Setaria italica Si019578m.g I 0.768
Si037727m.g Setaria italica Si037727m.g I 0.990
Si040019m.g Setaria italica Si040019m.g I 0.758
TCM_004106 Theobroma cacao TCM_004106 I 0.717
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.768
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.758
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.747
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.758
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.727
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.768
Traes_6AS_4EEA3E388 Triticum aestivum Traes_6AS_4EEA3E388 I 0.707
Traes_6BS_179B5B6E1 Triticum aestivum Traes_6BS_179B5B6E1 I 0.717
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.768
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.768
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.727
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.717
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.758
Ca_07763 Cicer arietinum Ca_07763 I 0.707
Ca_12214 Cicer arietinum Ca_12214 I 0.717
Cla006087 Citrullus lanatus Cla006087 I 0.707
Cla006088 Citrullus lanatus Cla006088 I 0.737
Pm020629 Prunus mume Pm020629 I 0.727
28428.m000040 Ricinus communis 28428.m000040 I 0.707
29883.m002035 Ricinus communis 29883.m002035 I 0.727
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.737
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.717
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.727
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.707
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.705
mgf020773m Mimulus guttatus mgf020773m I 0.707
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.707
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.717
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.717
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.727
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.737
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.727
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.737
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.727
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.737
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.737
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.707
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.727
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.727
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.727
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.707
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.727
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.717
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.727
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.707
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.707
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.727
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.737
MDP0000131964 Malus domestica MDP0000131964 I 0.717
MDP0000145761 Malus domestica MDP0000145761 I 0.717
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.737
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.768
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.727
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.758
Pavir.Ib00282 Panicum virgatum Pavir.Ib00282 I 0.980
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.758
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.717
Pavir.J24246 Panicum virgatum Pavir.J24246 I 0.980
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.768
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.737
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.727
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.727
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.737
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.717
Bra016876 Brassica rapa Bra016876 N 0.717
BRADI1G75120 Brachypodium distachyon BRADI1G75120 N 0.869
MLOC_10783 Hordeum vulgare MLOC_10783 N 0.879
OLONG_020840 Oryza longistaminata OLONG_020840 N 0.848
OMERI07G01670 Oryza meridionalis OMERI07G01670 N 0.848
Traes_4AL_3BA1D51E2 Triticum aestivum Traes_4AL_3BA1D51E2 N 0.879
Traes_4BL_F71DE14F7 Triticum aestivum Traes_4BL_F71DE14F7 N 0.859
Traes_4BS_B43A99154 Triticum aestivum Traes_4BS_B43A99154 N 0.859
Traes_4DL_05F87867C Triticum aestivum Traes_4DL_05F87867C N 0.869