CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LBD2
(
Arabidopsis lyrata
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
scaffold_100624.1
T245991_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD2
M06953_2.00
Arabidopsis thaliana
SCGANRAWDNCGGHR
YDCCGNHWTYNTCGS
Dap-seq
OMalley et al.(2016)
LBD2_col_a
1.000
1.000
LBD2
M06954_2.00
Arabidopsis thaliana
SCGANAAWNTCGGDN
NHCCGANWTTNTCGS
Dap-seq
OMalley et al.(2016)
LBD2_colamp_a
1.000
1.000
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_100624.1
LOB
24
120
ACASCKHQRKKCNNECILSPYFPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSDSLTWEALWRQKDPVLGSYGEYRRICEELKLYKSLVHNQ
Links
Other
LOB
family TFs
Other
Arabidopsis lyrata
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LBD2
Arabidopsis thaliana
AT1G06280
D
1.000
Bostr.25219s0329
Boechera stricta
Bostr.25219s0329
I
1.000
Bo8g006050
Brassica oleracea
Bo8g006050
I
0.969
Bo8g114670
Brassica oleracea
Bo8g114670
I
0.959
Bra030647
Brassica rapa
Bra030647
I
0.959
Bra032430
Brassica rapa
Bra032430
I
0.918
Cagra.1671s0259
Capsella grandiflora
Cagra.1671s0259
I
1.000
Carubv10011711m.g
Capsella rubella
Carubv10011711m.g
I
1.000
Thhalv10008796m.g
Eutrema salsugineum
Thhalv10008796m.g
I
0.990