CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si002412m.g
(
Setaria italica
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Si002412m.g
T246034_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si002412m
LOB
4
106
SCNGCRVLRKGCSDNCAIRLCLQWIRSPDAQGNATVFLAKFYGRAGLINLIAAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWKLCQSAVESVLRG
Links
Other
LOB
family TFs
Other
Setaria italica
TFs
240 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00079p00088960
Amborella trichopoda
AMTR_s00079p00088960
N
0.816
AMTR_s00137p00087340
Amborella trichopoda
AMTR_s00137p00087340
N
0.724
Aquca_026_00293
Aquilegia coerulea
Aquca_026_00293
N
0.816
Aquca_042_00143
Aquilegia coerulea
Aquca_042_00143
N
0.704
LBD40
Arabidopsis lyrata
Al_scaffold_0002_1337
N
0.786
LBD42
Arabidopsis lyrata
fgenesh2_kg.2__1100__AT1G68510.1
N
0.745
LBD41
Arabidopsis lyrata
fgenesh2_kg.3__191__AT3G02550.1
N
0.796
LBD37
Arabidopsis lyrata
fgenesh2_kg.8__2670__AT5G67420.1
N
0.704
LBD38
Arabidopsis lyrata
scaffold_502015.1
N
0.714
LBD40
Arabidopsis thaliana
AT1G67100
N
0.788
LBD42
Arabidopsis thaliana
AT1G68510
N
0.745
LBD41
Arabidopsis thaliana
AT3G02550
N
0.796
LBD38
Arabidopsis thaliana
AT3G49940
N
0.714
Bostr.0568s0168
Boechera stricta
Bostr.0568s0168
N
0.704
Bostr.1460s0172
Boechera stricta
Bostr.1460s0172
N
0.788
Bostr.26959s0040
Boechera stricta
Bostr.26959s0040
N
0.755
Bostr.26959s0198
Boechera stricta
Bostr.26959s0198
N
0.788
Bostr.2902s0344
Boechera stricta
Bostr.2902s0344
N
0.765
Bostr.6864s0247
Boechera stricta
Bostr.6864s0247
N
0.704
BRADI4G16740
Brachypodium distachyon
BRADI4G16740
N
0.798
BRADI4G16750
Brachypodium distachyon
BRADI4G16750
N
0.798
Bo1g156310
Brassica oleracea
Bo1g156310
N
0.808
Bo2g055410
Brassica oleracea
Bo2g055410
N
0.778
Bo2g168020
Brassica oleracea
Bo2g168020
N
0.704
Bo3g055690
Brassica oleracea
Bo3g055690
N
0.806
Bo5g132850
Brassica oleracea
Bo5g132850
N
0.704
Bo6g106960
Brassica oleracea
Bo6g106960
N
0.742
Bo7g063630
Brassica oleracea
Bo7g063630
N
0.704
Bo9g019150
Brassica oleracea
Bo9g019150
N
0.704
Bra004315
Brassica rapa
Bra004315
N
0.742
Bra012164
Brassica rapa
Bra012164
N
0.704
Bra021433
Brassica rapa
Bra021433
N
0.806
Bra031833
Brassica rapa
Bra031833
N
0.704
Bra037847
Brassica rapa
Bra037847
N
0.714
PK03169.1
Cannabis sativa
PK03169.1
N
0.816
PK04548.1
Cannabis sativa
PK04548.1
N
0.714
PK04625.1
Cannabis sativa
PK04625.1
N
0.814
PK15647.1
Cannabis sativa
PK15647.1
N
0.716
PK25954.1
Cannabis sativa
PK25954.1
N
0.739
Cagra.0342s0030
Capsella grandiflora
Cagra.0342s0030
N
0.704
Cagra.1194s0049
Capsella grandiflora
Cagra.1194s0049
N
0.788
Cagra.3364s0006
Capsella grandiflora
Cagra.3364s0006
N
0.742
Cagra.4491s0014
Capsella grandiflora
Cagra.4491s0014
N
0.714
Cagra.6164s0006
Capsella grandiflora
Cagra.6164s0006
N
0.788
Cagra.6845s0054
Capsella grandiflora
Cagra.6845s0054
N
0.758
Carubv10000015m.g
Capsella rubella
Carubv10000015m.g
N
0.765
Carubv10002654m.g
Capsella rubella
Carubv10002654m.g
N
0.776
Carubv10015363m.g
Capsella rubella
Carubv10015363m.g
N
0.788
Carubv10017944m.g
Capsella rubella
Carubv10017944m.g
N
0.714
Carubv10021721m.g
Capsella rubella
Carubv10021721m.g
N
0.788
Carubv10022391m.g
Capsella rubella
Carubv10022391m.g
N
0.742
Carubv10027507m.g
Capsella rubella
Carubv10027507m.g
N
0.714
evm.TU.supercontig_106.63
Carica papaya
evm.TU.supercontig_106.63
N
0.704
evm.TU.supercontig_1.42
Carica papaya
evm.TU.supercontig_1.42
N
0.776
evm.TU.supercontig_282.15
Carica papaya
evm.TU.supercontig_282.15
N
0.827
evm.TU.supercontig_3.514
Carica papaya
evm.TU.supercontig_3.514
N
0.735
evm.TU.supercontig_6.40
Carica papaya
evm.TU.supercontig_6.40
N
0.714
Ca_09342
Cicer arietinum
Ca_09342
N
0.714
Ca_22996
Cicer arietinum
Ca_22996
N
0.778
Cla007208
Citrullus lanatus
Cla007208
N
0.816
Cla019264
Citrullus lanatus
Cla019264
N
0.755
Cla020705
Citrullus lanatus
Cla020705
N
0.755
Ciclev10013705m.g
Citrus clementina
Ciclev10013705m.g
N
0.806
Ciclev10016422m.g
Citrus clementina
Ciclev10016422m.g
N
0.747
Ciclev10022068m.g
Citrus clementina
Ciclev10022068m.g
N
0.765
Ciclev10026374m.g
Citrus clementina
Ciclev10026374m.g
N
0.714
orange1.1g022591m.g
Citrus sinensis
orange1.1g022591m.g
N
0.806
orange1.1g026365m.g
Citrus sinensis
orange1.1g026365m.g
N
0.714
orange1.1g038007m.g
Citrus sinensis
orange1.1g038007m.g
N
0.765
orange1.1g045357m.g
Citrus sinensis
orange1.1g045357m.g
N
0.745
Cucsa.031350
Cucumis sativus
Cucsa.031350
N
0.816
Cucsa.199060
Cucumis sativus
Cucsa.199060
N
0.755
Cucsa.283560
Cucumis sativus
Cucsa.283560
N
0.755
Eucgr.F02492
Eucalyptus grandis
Eucgr.F02492
N
0.786
Eucgr.G02321
Eucalyptus grandis
Eucgr.G02321
N
0.806
Eucgr.H02293
Eucalyptus grandis
Eucgr.H02293
N
0.714
Eucgr.J01501
Eucalyptus grandis
Eucgr.J01501
N
0.786
Eucgr.K02222
Eucalyptus grandis
Eucgr.K02222
N
0.724
Thhalv10004811m.g
Eutrema salsugineum
Thhalv10004811m.g
N
0.704
Thhalv10010666m.g
Eutrema salsugineum
Thhalv10010666m.g
N
0.704
Thhalv10019048m.g
Eutrema salsugineum
Thhalv10019048m.g
N
0.788
Thhalv10019494m.g
Eutrema salsugineum
Thhalv10019494m.g
N
0.776
Thhalv10021328m.g
Eutrema salsugineum
Thhalv10021328m.g
N
0.788
gene03741-v1.0-hybrid
Fragaria vesca
gene03741-v1.0-hybrid
N
0.735
gene05722-v1.0-hybrid
Fragaria vesca
gene05722-v1.0-hybrid
N
0.704
gene10300-v1.0-hybrid
Fragaria vesca
gene10300-v1.0-hybrid
N
0.798
GLYMA08G48040
Glycine max
GLYMA08G48040
N
0.816
GLYMA13G07590
Glycine max
GLYMA13G07590
N
0.806
GLYMA18G53440
Glycine max
GLYMA18G53440
N
0.827
GLYMA19G06280
Glycine max
GLYMA19G06280
N
0.796
Gorai.002G217800
Gossypium raimondii
Gorai.002G217800
N
0.786
Gorai.005G190300
Gossypium raimondii
Gorai.005G190300
N
0.776
Gorai.007G222000
Gossypium raimondii
Gorai.007G222000
N
0.714
Gorai.008G056000
Gossypium raimondii
Gorai.008G056000
N
0.808
MLOC_58304
Hordeum vulgare
MLOC_58304
N
0.768
LPERR01G01830
Leersia perrieri
LPERR01G01830
N
0.959
LPERR01G15290
Leersia perrieri
LPERR01G15290
N
0.796
LPERR03G19360
Leersia perrieri
LPERR03G19360
N
0.704
LPERR07G17900
Leersia perrieri
LPERR07G17900
N
0.703
Lus10028470.g
Linum usitatissimum
Lus10028470.g
N
0.806
chr1.LjT23D08.90.nc
Lotus japonicus
chr1.LjT23D08.90.nc
N
0.798
chr4.CM0128.270.nc
Lotus japonicus
chr4.CM0128.270.nc
N
0.704
MDP0000136037
Malus domestica
MDP0000136037
N
0.808
MDP0000233303
Malus domestica
MDP0000233303
N
0.714
MDP0000581845
Malus domestica
MDP0000581845
N
0.714
cassava22449.valid.m1
Manihot esculenta
cassava22449.valid.m1
N
0.714
cassava226.valid.m1
Manihot esculenta
cassava226.valid.m1
N
0.714
cassava35733.valid.m1
Manihot esculenta
cassava35733.valid.m1
N
0.704
cassava38982.m1
Manihot esculenta
cassava38982.m1
N
0.827
cassava43296.valid.m1
Manihot esculenta
cassava43296.valid.m1
N
0.816
cassava60.valid.m1
Manihot esculenta
cassava60.valid.m1
N
0.827
cassava6185.valid.m1
Manihot esculenta
cassava6185.valid.m1
N
0.827
cassava7497.valid.m1
Manihot esculenta
cassava7497.valid.m1
N
0.714
MTR_4g095600
Medicago truncatula
MTR_4g095600
N
0.704
MTR_6g018270
Medicago truncatula
MTR_6g018270
N
0.786
MTR_7g007010
Medicago truncatula
MTR_7g007010
N
0.816
mgf007319m
Mimulus guttatus
mgf007319m
N
0.714
mgf010898m
Mimulus guttatus
mgf010898m
N
0.806
mgf011656m
Mimulus guttatus
mgf011656m
N
0.786
mgf016064m
Mimulus guttatus
mgf016064m
N
0.704
mgf017960m
Mimulus guttatus
mgf017960m
N
0.735
mgf021653m
Mimulus guttatus
mgf021653m
N
0.736
GSMUA_Achr1G20970_001
Musa acuminata
GSMUA_Achr1G20970_001
N
0.786
GSMUA_Achr2G14600_001
Musa acuminata
GSMUA_Achr2G14600_001
N
0.816
GSMUA_Achr2G22720_001
Musa acuminata
GSMUA_Achr2G22720_001
N
0.776
GSMUA_Achr3G18860_001
Musa acuminata
GSMUA_Achr3G18860_001
N
0.704
GSMUA_Achr3G29520_001
Musa acuminata
GSMUA_Achr3G29520_001
N
0.816
GSMUA_Achr3G30130_001
Musa acuminata
GSMUA_Achr3G30130_001
N
0.704
GSMUA_Achr4G03700_001
Musa acuminata
GSMUA_Achr4G03700_001
N
0.796
GSMUA_Achr4G06820_001
Musa acuminata
GSMUA_Achr4G06820_001
N
0.827
GSMUA_Achr4G13790_001
Musa acuminata
GSMUA_Achr4G13790_001
N
0.816
GSMUA_Achr9G00580_001
Musa acuminata
GSMUA_Achr9G00580_001
N
0.827
GSMUA_Achr9G21360_001
Musa acuminata
GSMUA_Achr9G21360_001
N
0.796
GSMUA_AchrUn_randomG00460_001
Musa acuminata
GSMUA_AchrUn_randomG00460_001
N
0.827
OBART01G01940
Oryza barthii
OBART01G01940
N
0.959
OBART01G17510
Oryza barthii
OBART01G17510
N
0.796
OBART03G22820
Oryza barthii
OBART03G22820
N
0.735
OB01G11830
Oryza brachyantha
OB01G11830
N
0.959
OB03G31560
Oryza brachyantha
OB03G31560
N
0.704
ORGLA01G0016600
Oryza glaberrima
ORGLA01G0016600
N
0.959
ORGLA03G0213800
Oryza glaberrima
ORGLA03G0213800
N
0.735
OGLUM01G02100
Oryza glumaepatula
OGLUM01G02100
N
0.959
OGLUM01G20320
Oryza glumaepatula
OGLUM01G20320
N
0.796
OGLUM03G23580
Oryza glumaepatula
OGLUM03G23580
N
0.735
BGIOSGA001546
Oryza indica
BGIOSGA001546
N
0.796
BGIOSGA002703
Oryza indica
BGIOSGA002703
N
0.959
BGIOSGA010454
Oryza indica
BGIOSGA010454
N
0.735
OLONG_008015
Oryza longistaminata
OLONG_008015
N
0.852
OLONG_015384
Oryza longistaminata
OLONG_015384
N
0.735
OMERI01G01380
Oryza meridionalis
OMERI01G01380
N
0.949
OMERI01G16320
Oryza meridionalis
OMERI01G16320
N
0.796
OMERI03G20600
Oryza meridionalis
OMERI03G20600
N
0.735
ONIVA01G02110
Oryza nivara
ONIVA01G02110
N
0.959
ONIVA01G19320
Oryza nivara
ONIVA01G19320
N
0.796
ONIVA03G24370
Oryza nivara
ONIVA03G24370
N
0.735
OPUNC01G01670
Oryza punctata
OPUNC01G01670
N
0.959
OPUNC01G18000
Oryza punctata
OPUNC01G18000
N
0.796
OPUNC03G21330
Oryza punctata
OPUNC03G21330
N
0.735
ORUFI01G02010
Oryza rufipogon
ORUFI01G02010
N
0.959
ORUFI01G19440
Oryza rufipogon
ORUFI01G19440
N
0.796
ORUFI03G23490
Oryza rufipogon
ORUFI03G23490
N
0.735
OS01G0129600
Oryza sativa
OS01G0129600
N
0.768
OS01G0511000
Oryza sativa
OS01G0511000
N
0.796
OS03G0445700
Oryza sativa
OS03G0445700
N
0.735
Pavir.Ea00650
Panicum virgatum
Pavir.Ea00650
N
0.949
Pavir.Ea01295
Panicum virgatum
Pavir.Ea01295
N
0.796
Pavir.Eb02390
Panicum virgatum
Pavir.Eb02390
N
0.768
Pavir.J00526
Panicum virgatum
Pavir.J00526
N
0.806
Pavir.J01483
Panicum virgatum
Pavir.J01483
N
0.806
Pavir.J11724
Panicum virgatum
Pavir.J11724
N
0.949
e_gw1.19.226.1
Physcomitrella patens
e_gw1.19.226.1
N
0.714
gw1.167.132.1
Physcomitrella patens
gw1.167.132.1
N
0.714
gw1.41.215.1
Physcomitrella patens
gw1.41.215.1
N
0.714
POPTR_0002s12020
Populus trichocarpa
POPTR_0002s12020
N
0.714
POPTR_0004s09920
Populus trichocarpa
POPTR_0004s09920
N
0.818
POPTR_0005s15670
Populus trichocarpa
POPTR_0005s15670
N
0.806
POPTR_0005s18900
Populus trichocarpa
POPTR_0005s18900
N
0.704
POPTR_0007s10010
Populus trichocarpa
POPTR_0007s10010
N
0.704
POPTR_0008s11950
Populus trichocarpa
POPTR_0008s11950
N
0.806
POPTR_0010s13480
Populus trichocarpa
POPTR_0010s13480
N
0.776
POPTR_0012s05340
Populus trichocarpa
POPTR_0012s05340
N
0.724
POPTR_0014s01770
Populus trichocarpa
POPTR_0014s01770
N
0.717
Pm005389
Prunus mume
Pm005389
N
0.704
Pm029059
Prunus mume
Pm029059
N
0.714
PRUPE_ppa009213mg
Prunus persica
PRUPE_ppa009213mg
N
0.808
PRUPE_ppa011233mg
Prunus persica
PRUPE_ppa011233mg
N
0.707
PRUPE_ppa014964mg
Prunus persica
PRUPE_ppa014964mg
N
0.704
27524.m000293
Ricinus communis
27524.m000293
N
0.857
28207.m000107
Ricinus communis
28207.m000107
N
0.796
29661.m000902
Ricinus communis
29661.m000902
N
0.714
30170.m013752
Ricinus communis
30170.m013752
N
0.704
SapurV1A.0078s0410
Salix purpurea
SapurV1A.0078s0410
N
0.776
SapurV1A.0079s0150
Salix purpurea
SapurV1A.0079s0150
N
0.776
SapurV1A.0116s0210
Salix purpurea
SapurV1A.0116s0210
N
0.704
SapurV1A.0315s0090
Salix purpurea
SapurV1A.0315s0090
N
0.806
SapurV1A.0845s0090
Salix purpurea
SapurV1A.0845s0090
N
0.704
SapurV1A.0851s0010
Salix purpurea
SapurV1A.0851s0010
N
0.765
SapurV1A.2860s0030
Salix purpurea
SapurV1A.2860s0030
N
0.704
SELMODRAFT_105005
Selaginella moellendorffii
SELMODRAFT_105005
N
0.735
SELMODRAFT_27399
Selaginella moellendorffii
SELMODRAFT_27399
N
0.735
SELMODRAFT_37532
Selaginella moellendorffii
SELMODRAFT_37532
N
0.722
SELMODRAFT_37566
Selaginella moellendorffii
SELMODRAFT_37566
N
0.763
SELMODRAFT_37570
Selaginella moellendorffii
SELMODRAFT_37570
N
0.763
SELMODRAFT_61520
Selaginella moellendorffii
SELMODRAFT_61520
N
0.724
Si004887m.g
Setaria italica
Si004887m.g
N
0.800
Si022660m.g
Setaria italica
Si022660m.g
N
0.796
Solyc02g085910.2
Solanum lycopersicum
Solyc02g085910.2
N
0.827
Solyc02g092550.2
Solanum lycopersicum
Solyc02g092550.2
N
0.735
Solyc03g119530.2
Solanum lycopersicum
Solyc03g119530.2
N
0.765
Solyc05g009320.2
Solanum lycopersicum
Solyc05g009320.2
N
0.806
PGSC0003DMG400005719
Solanum tuberosum
PGSC0003DMG400005719
N
0.765
PGSC0003DMG400012653
Solanum tuberosum
PGSC0003DMG400012653
N
0.827
PGSC0003DMG400014547
Solanum tuberosum
PGSC0003DMG400014547
N
0.806
PGSC0003DMG400024936
Solanum tuberosum
PGSC0003DMG400024936
N
0.735
Sb01g032580
Sorghum bicolor
Sb01g032580
N
0.796
Sb03g007270
Sorghum bicolor
Sb03g007270
N
0.959
Sb09g025700
Sorghum bicolor
Sb09g025700
N
0.724
Sb09g025710
Sorghum bicolor
Sb09g025710
N
0.773
Sb09g030780
Sorghum bicolor
Sb09g030780
N
0.786
TCM_000766
Theobroma cacao
TCM_000766
N
0.714
TCM_009888
Theobroma cacao
TCM_009888
N
0.806
TCM_012338
Theobroma cacao
TCM_012338
N
0.745
TCM_019459
Theobroma cacao
TCM_019459
N
0.827
Traes_2AL_450404EA6
Triticum aestivum
Traes_2AL_450404EA6
N
0.768
Traes_2BL_3A840DB921
Triticum aestivum
Traes_2BL_3A840DB921
N
0.768
Traes_2DL_9D8B5B436
Triticum aestivum
Traes_2DL_9D8B5B436
N
0.768
TRAES3BF008500030CFD_g
Triticum aestivum
TRAES3BF008500030CFD_g
N
0.776
TRAES3BF008600030CFD_g
Triticum aestivum
TRAES3BF008600030CFD_g
N
0.776
Traes_4BL_7F70575F9
Triticum aestivum
Traes_4BL_7F70575F9
N
0.704
Traes_4BL_D44ACD58E
Triticum aestivum
Traes_4BL_D44ACD58E
N
0.875
Traes_4DL_E0847FBC5
Triticum aestivum
Traes_4DL_E0847FBC5
N
0.745
VIT_01s0011g03530
Vitis vinifera
VIT_01s0011g03530
N
0.745
VIT_01s0011g03540
Vitis vinifera
VIT_01s0011g03540
N
0.786
VIT_14s0006g02950
Vitis vinifera
VIT_14s0006g02950
N
0.808
VIT_17s0000g03720
Vitis vinifera
VIT_17s0000g03720
N
0.827
AC234149.1_FG002
Zea mays
AC234149.1_FG002
N
0.704
GRMZM2G060544
Zea mays
GRMZM2G060544
N
0.796
GRMZM2G073044
Zea mays
GRMZM2G073044
N
0.776
GRMZM2G132693
Zea mays
GRMZM2G132693
N
0.949
GRMZM2G386674
Zea mays
GRMZM2G386674
N
0.765