CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si012018m.g
(
Setaria italica
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Si012018m.g
T246043_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.848
0.848
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.848
0.848
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si012018m
LOB
54
152
PCAACKLLRRRCAQECPFSPYFSPLEPHKFAAVHKVFGASNVSKMLLEVHESQRADAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAELATVRA
Links
Other
LOB
family TFs
Other
Setaria italica
TFs
164 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aan_R008738
Calypte anna
Aan_R008738
N
Afo_R010661
Aptenodytes forsteri
Afo_R010661
N
ENSAPLG00000003921
Anas platyrhynchos
ENSAPLG00000003921
N
ahr2
Danio rerio
ENSDARG00000021833
N
ahr2
Gasterosteus aculeatus
ENSGACG00000008466
N
ENSGALG00000023742
Gallus gallus
ENSGALG00000023742
N
ENSGMOG00000004709
Gadus morhua
ENSGMOG00000004709
N
ENSLACG00000012651
Latimeria chalumnae
ENSLACG00000012651
N
ENSLOCG00000013271
Lepisosteus oculatus
ENSLOCG00000013271
N
ENSMEUG00000006235
Macropus eugenii
ENSMEUG00000006235
N
ENSOCUG00000028055
Oryctolagus cuniculus
ENSOCUG00000028055
N
ENSONIG00000010232
Oreochromis niloticus
ENSONIG00000010232
N
ENSOPRG00000010358
Ochotona princeps
ENSOPRG00000010358
I
ENSORLG00000018196
Oryzias latipes
ENSORLG00000018196
N
ahr2
Tetraodon nigroviridis
ENSTNIG00000017165
N
ahrr
Takifugu rubripes
ENSTRUG00000003745
N
ahr2a
Takifugu rubripes
ENSTRUG00000009303
N
Gfo_R012068
Geospiza fortis
Gfo_R012068
N
Pvit_18498
Pogona vitticeps
Pvit_18498
N
XP_002161735.1
Hydra magnipapillata
XP_002161735.1
I