Si012018m.g (Setaria italica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Si012018m.g T246043_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.848 0.848
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.848 0.848
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si012018m LOB 54 152

Links

Other LOB family TFs
Other Setaria italica TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD13 Arabidopsis thaliana AT2G30340 D 0.848
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.879
LBD15 Arabidopsis thaliana AT2G40470 I 0.889
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.889
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.970
Bo3g034980 Brassica oleracea Bo3g034980 I 0.879
Bo4g012620 Brassica oleracea Bo4g012620 I 0.869
Bo4g059520 Brassica oleracea Bo4g059520 I 0.848
Bo4g172950 Brassica oleracea Bo4g172950 I 0.838
Bo4g190140 Brassica oleracea Bo4g190140 I 0.737
Bo4g190210 Brassica oleracea Bo4g190210 I 0.869
Bra000188 Brassica rapa Bra000188 I 0.879
Bra004572 Brassica rapa Bra004572 I 0.869
Bra016992 Brassica rapa Bra016992 I 0.859
Bra018320 Brassica rapa Bra018320 I 0.848
Bra021627 Brassica rapa Bra021627 I 0.838
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.929
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.869
F775_25790 Aegilops tauschii F775_25790 I 0.879
F775_52636 Aegilops tauschii F775_52636 I 0.949
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.838
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.889
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.848
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.859
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.859
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.869
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.879
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.980
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.889
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.869
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.859
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.879
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.889
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.939
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.879
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.949
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.838
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.859
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.838
OB01G44400 Oryza brachyantha OB01G44400 I 0.879
OB05G14280 Oryza brachyantha OB05G14280 I 0.966
OBART01G35680 Oryza barthii OBART01G35680 I 0.889
OBART05G04570 Oryza barthii OBART05G04570 I 0.970
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.889
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.970
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.889
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.828
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.889
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.970
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.889
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.970
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.879
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.889
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.970
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.889
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.970
OS01G0825000 Oryza sativa OS01G0825000 I 0.889
OS05G0165450 Oryza sativa OS05G0165450 I 0.970
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.828
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.869
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.859
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.859
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.818
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.859
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.869
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.838
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.879
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.990
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.778
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.778
Si004575m.g Setaria italica Si004575m.g I 0.889
Si026864m.g Setaria italica Si026864m.g I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.717
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.838
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.869
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.848
TCM_042262 Theobroma cacao TCM_042262 I 0.889
TCM_045438 Theobroma cacao TCM_045438 I 0.879
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.949
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.949
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.949
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.869
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.945
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.879
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.818
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.879
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.717
Ca_04126 Cicer arietinum Ca_04126 I 0.869
Ca_12420 Cicer arietinum Ca_12420 I 0.828
Ca_15642 Cicer arietinum Ca_15642 I 0.828
Cla007391 Citrullus lanatus Cla007391 I 0.869
Pm000277 Prunus mume Pm000277 I 0.828
29729.m002335 Ricinus communis 29729.m002335 I 0.869
29957.m001411 Ricinus communis 29957.m001411 I 0.838
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.879
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.869
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.818
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.848
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.798
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.828
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.828
mgf011471m Mimulus guttatus mgf011471m I 0.859
mgf020556m Mimulus guttatus mgf020556m I 0.869
mgf026046m Mimulus guttatus mgf026046m I 0.717
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.879
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.889
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.848
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.848
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.889
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.889
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.838
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.828
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.869
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.838
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.859
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.879
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.879
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.879
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.828
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.889
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.879
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.859
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.838
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.869
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.879
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.828
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.818
MDP0000167580 Malus domestica MDP0000167580 I 0.840
MDP0000278334 Malus domestica MDP0000278334 I 0.838
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.869
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.828
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.980
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.869
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.879
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.717
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.717
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.990
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.717
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.717
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.717
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.859
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.818
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.848
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.879
PK03716.1 Cannabis sativa PK03716.1 I 0.735
PK11564.1 Cannabis sativa PK11564.1 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706
PK17217.1 Cannabis sativa PK17217.1 I 0.879
PK21617.1 Cannabis sativa PK21617.1 I 0.935
PK29334.1 Cannabis sativa PK29334.1 I 0.703
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.848
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.869
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.824
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.768
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.746
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.780