CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc05g048740.2
(
Solanum lycopersicum
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Solyc05g048740.2
T246089_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.707
0.707
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc05g048740.2.1
LOB
54
152
PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELPEEQRVDAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQAEFAKAQA
Links
Other
LOB
family TFs
Other
Solanum lycopersicum
TFs
205 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LBD4
Arabidopsis thaliana
AT1G31320
D
0.707
AC214648.3_FG005
Zea mays
AC214648.3_FG005
I
0.768
LBD4
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002773
I
0.707
GLYMA10G35760
Glycine max
GLYMA10G35760
I
0.929
GLYMA12G07650
Glycine max
GLYMA12G07650
I
0.889
GLYMA13G40370
Glycine max
GLYMA13G40370
I
0.859
GLYMA15G05030
Glycine max
GLYMA15G05030
I
0.859
GLYMA20G31780
Glycine max
GLYMA20G31780
I
0.929
GSMUA_Achr10G22970_001
Musa acuminata
GSMUA_Achr10G22970_001
I
0.848
GSMUA_Achr6G33070_001
Musa acuminata
GSMUA_Achr6G33070_001
I
0.818
GSMUA_Achr7G15500_001
Musa acuminata
GSMUA_Achr7G15500_001
I
0.848
MTR_1g095850
Medicago truncatula
MTR_1g095850
I
0.919
MTR_2g093310
Medicago truncatula
MTR_2g093310
I
0.838
MTR_4g060950
Medicago truncatula
MTR_4g060950
I
0.859
OB05G11740
Oryza brachyantha
OB05G11740
I
0.838
ONIVA05G01850
Oryza nivara
ONIVA05G01850
I
0.727
PGSC0003DMG400007503
Solanum tuberosum
PGSC0003DMG400007503
I
0.838
PGSC0003DMG400008649
Solanum tuberosum
PGSC0003DMG400008649
I
0.707
PGSC0003DMG400025400
Solanum tuberosum
PGSC0003DMG400025400
I
0.848
PGSC0003DMG400030456
Solanum tuberosum
PGSC0003DMG400030456
I
0.707
POPTR_0005s10050
Populus trichocarpa
POPTR_0005s10050
I
0.731
POPTR_0007s08290
Populus trichocarpa
POPTR_0007s08290
I
0.707
POPTR_0008s04350
Populus trichocarpa
POPTR_0008s04350
I
0.859
POPTR_0010s22470
Populus trichocarpa
POPTR_0010s22470
I
0.869
PRUPE_ppa011528mg
Prunus persica
PRUPE_ppa011528mg
I
0.869
PRUPE_ppa012253mg
Prunus persica
PRUPE_ppa012253mg
I
0.707
PRUPE_ppa012322mg
Prunus persica
PRUPE_ppa012322mg
I
0.707
PRUPE_ppa012504mg
Prunus persica
PRUPE_ppa012504mg
I
0.707
PRUPE_ppa023989mg
Prunus persica
PRUPE_ppa023989mg
I
0.879
Sb09g002190
Sorghum bicolor
Sb09g002190
I
0.818
Solyc06g005090.2
Solanum lycopersicum
Solyc06g005090.2
I
0.859
Solyc06g082310.2
Solanum lycopersicum
Solyc06g082310.2
I
0.707
Solyc11g045530.1
Solanum lycopersicum
Solyc11g045530.1
I
0.707
Solyc11g072470.1
Solanum lycopersicum
Solyc11g072470.1
I
0.859
TCM_032557
Theobroma cacao
TCM_032557
I
0.707
TCM_041094
Theobroma cacao
TCM_041094
I
0.869
TCM_043081
Theobroma cacao
TCM_043081
I
0.879
LBD4
Vitis vinifera
VIT_00s0125g00290
I
0.707
VIT_06s0004g03330
Vitis vinifera
VIT_06s0004g03330
I
0.859
VIT_06s0004g03350
Vitis vinifera
VIT_06s0004g03350
I
0.879
VIT_13s0019g03700
Vitis vinifera
VIT_13s0019g03700
I
0.879
Ca_04287
Cicer arietinum
Ca_04287
I
0.919
Ca_14605
Cicer arietinum
Ca_14605
I
0.869
Cla000556
Citrullus lanatus
Cla000556
I
0.838
Cla013678
Citrullus lanatus
Cla013678
I
0.707
Cla020379
Citrullus lanatus
Cla020379
I
0.889
Pm000938
Prunus mume
Pm000938
I
0.848
Pm011040
Prunus mume
Pm011040
I
0.707
Pm018585
Prunus mume
Pm018585
I
0.879
30111.m000703
Ricinus communis
30111.m000703
I
0.869
30169.m006340
Ricinus communis
30169.m006340
I
0.707
cassava11218.m1
Manihot esculenta
cassava11218.m1
I
0.869
cassava20471.m1
Manihot esculenta
cassava20471.m1
I
0.707
cassava27818.m1
Manihot esculenta
cassava27818.m1
I
0.707
cassava30732.valid.m1
Manihot esculenta
cassava30732.valid.m1
I
0.707
cassava40961.m1
Manihot esculenta
cassava40961.m1
I
0.899
cassava819.valid.m1
Manihot esculenta
cassava819.valid.m1
I
0.869
Cucsa.052720
Cucumis sativus
Cucsa.052720
I
0.818
Cucsa.118370
Cucumis sativus
Cucsa.118370
I
0.707
mgf018189m
Mimulus guttatus
mgf018189m
I
0.717
mgf022958m
Mimulus guttatus
mgf022958m
I
0.707
mgf026046m
Mimulus guttatus
mgf026046m
I
0.727
Aquca_118_00035
Aquilegia coerulea
Aquca_118_00035
I
0.707
Bostr.15697s0446
Boechera stricta
Bostr.15697s0446
I
0.707
Cagra.1508s0061
Capsella grandiflora
Cagra.1508s0061
I
0.707
Carubv10010462m.g
Capsella rubella
Carubv10010462m.g
I
0.707
Ciclev10006113m.g
Citrus clementina
Ciclev10006113m.g
I
0.717
Ciclev10029283m.g
Citrus clementina
Ciclev10029283m.g
I
0.879
Ciclev10032772m.g
Citrus clementina
Ciclev10032772m.g
I
0.808
Ciclev10033956m.g
Citrus clementina
Ciclev10033956m.g
I
0.889
Eucgr.B02465
Eucalyptus grandis
Eucgr.B02465
I
0.869
Eucgr.J01123
Eucalyptus grandis
Eucgr.J01123
I
0.859
evm.TU.supercontig_19.133
Carica papaya
evm.TU.supercontig_19.133
I
0.707
evm.TU.supercontig_192.6
Carica papaya
evm.TU.supercontig_192.6
I
0.707
gene20083-v1.0-hybrid
Fragaria vesca
gene20083-v1.0-hybrid
I
0.707
gene25294-v1.0-hybrid
Fragaria vesca
gene25294-v1.0-hybrid
I
0.848
gene30046-v1.0-hybrid
Fragaria vesca
gene30046-v1.0-hybrid
I
0.707
Gorai.001G129700
Gossypium raimondii
Gorai.001G129700
I
0.869
Gorai.002G104500
Gossypium raimondii
Gorai.002G104500
I
0.707
Gorai.004G012800
Gossypium raimondii
Gorai.004G012800
I
0.848
Gorai.006G120900
Gossypium raimondii
Gorai.006G120900
I
0.879
Gorai.010G203800
Gossypium raimondii
Gorai.010G203800
I
0.899
Gorai.013G002900
Gossypium raimondii
Gorai.013G002900
I
0.838
Lus10011645.g
Linum usitatissimum
Lus10011645.g
I
0.808
Lus10031191.g
Linum usitatissimum
Lus10031191.g
I
0.707
Lus10036130.g
Linum usitatissimum
Lus10036130.g
I
0.808
Lus10040373.g
Linum usitatissimum
Lus10040373.g
I
0.919
MDP0000121203
Malus domestica
MDP0000121203
I
0.707
MDP0000123013
Malus domestica
MDP0000123013
I
0.869
MDP0000151784
Malus domestica
MDP0000151784
I
0.869
MDP0000218986
Malus domestica
MDP0000218986
I
0.838
MDP0000268890
Malus domestica
MDP0000268890
I
0.707
MDP0000284409
Malus domestica
MDP0000284409
I
0.707
MDP0000318244
Malus domestica
MDP0000318244
I
0.838
MDP0000319331
Malus domestica
MDP0000319331
I
0.848
MDP0000822986
Malus domestica
MDP0000822986
I
0.848
orange1.1g026556m.g
Citrus sinensis
orange1.1g026556m.g
I
0.889
orange1.1g044340m.g
Citrus sinensis
orange1.1g044340m.g
I
0.717
orange1.1g045080m.g
Citrus sinensis
orange1.1g045080m.g
I
0.808
orange1.1g047491m.g
Citrus sinensis
orange1.1g047491m.g
I
0.879
Pavir.Ca00718
Panicum virgatum
Pavir.Ca00718
I
0.808
Pavir.J04684
Panicum virgatum
Pavir.J04684
I
0.808
SapurV1A.0023s0430
Salix purpurea
SapurV1A.0023s0430
I
0.869
SapurV1A.0038s0110
Salix purpurea
SapurV1A.0038s0110
I
0.879
SapurV1A.0085s0450
Salix purpurea
SapurV1A.0085s0450
I
0.727
SapurV1A.0284s0080
Salix purpurea
SapurV1A.0284s0080
I
0.717
Thhalv10008917m.g
Eutrema salsugineum
Thhalv10008917m.g
I
0.707
PK11564.1
Cannabis sativa
PK11564.1
I
0.717
PK23777.1
Cannabis sativa
PK23777.1
I
0.879
PK27389.1
Cannabis sativa
PK27389.1
I
0.869
CM1887.100.nc
Lotus japonicus
CM1887.100.nc
I
0.929
AMTR_s00080p00153120
Amborella trichopoda
AMTR_s00080p00153120
N
0.838
LBD11
Arabidopsis thaliana
AT2G28500
N
0.838
BGIOSGA010952
Oryza indica
BGIOSGA010952
N
0.758
BGIOSGA038947
Oryza indica
BGIOSGA038947
N
0.758
Bo01039s010
Brassica oleracea
Bo01039s010
N
0.848
Bo3g040220
Brassica oleracea
Bo3g040220
N
0.818
Bo4g165420
Brassica oleracea
Bo4g165420
N
0.838
Bo5g008590
Brassica oleracea
Bo5g008590
N
0.838
Bo8g112780
Brassica oleracea
Bo8g112780
N
0.828
Bra000491
Brassica rapa
Bra000491
N
0.818
Bra011942
Brassica rapa
Bra011942
N
0.838
Bra018675
Brassica rapa
Bra018675
N
0.838
Bra031599
Brassica rapa
Bra031599
N
0.818
Bra035698
Brassica rapa
Bra035698
N
0.838
BRADI1G65760
Brachypodium distachyon
BRADI1G65760
N
0.737
F775_02335
Aegilops tauschii
F775_02335
N
0.737
LBD1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1000623
N
0.848
LBD11
Arabidopsis lyrata
fgenesh2_kg.4__820__AT2G28500.1
N
0.848
GLYMA11G15810
Glycine max
GLYMA11G15810
N
0.859
GRMZM2G021095
Zea mays
GRMZM2G021095
N
0.768
GRMZM2G145568
Zea mays
GRMZM2G145568
N
0.758
GRMZM2G165805
Zea mays
GRMZM2G165805
N
0.818
GSMUA_Achr3G17800_001
Musa acuminata
GSMUA_Achr3G17800_001
N
0.747
GSMUA_Achr4G16790_001
Musa acuminata
GSMUA_Achr4G16790_001
N
0.737
GSMUA_Achr8G09700_001
Musa acuminata
GSMUA_Achr8G09700_001
N
0.798
GSMUA_Achr9G04330_001
Musa acuminata
GSMUA_Achr9G04330_001
N
0.717
LPERR03G11720
Leersia perrieri
LPERR03G11720
N
0.747
LPERR05G01520
Leersia perrieri
LPERR05G01520
N
0.859
MLOC_68570
Hordeum vulgare
MLOC_68570
N
0.798
OB03G23270
Oryza brachyantha
OB03G23270
N
0.747
OBART03G13260
Oryza barthii
OBART03G13260
N
0.758
OBART05G01640
Oryza barthii
OBART05G01640
N
0.788
OGLUM03G13350
Oryza glumaepatula
OGLUM03G13350
N
0.758
OMERI03G12370
Oryza meridionalis
OMERI03G12370
N
0.758
OMERI05G01730
Oryza meridionalis
OMERI05G01730
N
0.733
ONIVA03G14510
Oryza nivara
ONIVA03G14510
N
0.758
OPUNC03G12790
Oryza punctata
OPUNC03G12790
N
0.758
OPUNC05G01600
Oryza punctata
OPUNC05G01600
N
0.746
OPUNC05G01610
Oryza punctata
OPUNC05G01610
N
0.804
ORGLA03G0128100
Oryza glaberrima
ORGLA03G0128100
N
0.758
ORGLA05G0016500
Oryza glaberrima
ORGLA05G0016500
N
0.828
ORUFI03G13900
Oryza rufipogon
ORUFI03G13900
N
0.758
OS03G0287400
Oryza sativa
OS03G0287400
N
0.758
PGSC0003DMG400004138
Solanum tuberosum
PGSC0003DMG400004138
N
0.889
PGSC0003DMG400025384
Solanum tuberosum
PGSC0003DMG400025384
N
0.717
Sb01g038650
Sorghum bicolor
Sb01g038650
N
0.768
Si024430m.g
Setaria italica
Si024430m.g
N
0.788
Si037280m.g
Setaria italica
Si037280m.g
N
0.747
Solyc04g050010.1
Solanum lycopersicum
Solyc04g050010.1
N
0.909
Solyc06g075330.1
Solanum lycopersicum
Solyc06g075330.1
N
0.784
Traes_1AS_26CB95294
Triticum aestivum
Traes_1AS_26CB95294
N
0.798
Traes_1BS_CE38938A8
Triticum aestivum
Traes_1BS_CE38938A8
N
0.798
Traes_1DS_A31FB6CB2
Triticum aestivum
Traes_1DS_A31FB6CB2
N
0.798
Traes_4AS_669BAF6C7
Triticum aestivum
Traes_4AS_669BAF6C7
N
0.727
Traes_4BL_97EDABD02
Triticum aestivum
Traes_4BL_97EDABD02
N
0.737
VIT_13s0019g03710
Vitis vinifera
VIT_13s0019g03710
N
0.758
VIT_13s0019g03720
Vitis vinifera
VIT_13s0019g03720
N
0.727
VIT_13s0019g03750
Vitis vinifera
VIT_13s0019g03750
N
0.788
VIT_13s0019g03760
Vitis vinifera
VIT_13s0019g03760
N
0.737
VIT_13s0019g03780
Vitis vinifera
VIT_13s0019g03780
N
0.727
VIT_13s0019g03810
Vitis vinifera
VIT_13s0019g03810
N
0.747
VIT_13s0019g03820
Vitis vinifera
VIT_13s0019g03820
N
0.707
VIT_13s0019g03830
Vitis vinifera
VIT_13s0019g03830
N
0.717
Ca_02507
Cicer arietinum
Ca_02507
N
0.808
Cla005133
Citrullus lanatus
Cla005133
N
0.818
Cla005134
Citrullus lanatus
Cla005134
N
0.869
cassava16668.m1
Manihot esculenta
cassava16668.m1
N
0.787
cassava44959.m1
Manihot esculenta
cassava44959.m1
N
0.838
Cucsa.166030
Cucumis sativus
Cucsa.166030
N
0.899
Cucsa.207390
Cucumis sativus
Cucsa.207390
N
0.778
Cucsa.207400
Cucumis sativus
Cucsa.207400
N
0.838
Cucsa.275710
Cucumis sativus
Cucsa.275710
N
0.707
mgf015666m
Mimulus guttatus
mgf015666m
N
0.848
mgf019622m
Mimulus guttatus
mgf019622m
N
0.859
mgf022524m
Mimulus guttatus
mgf022524m
N
0.899
Aquca_027_00112
Aquilegia coerulea
Aquca_027_00112
N
0.798
Bostr.25219s0157
Boechera stricta
Bostr.25219s0157
N
0.859
Bostr.27991s0074
Boechera stricta
Bostr.27991s0074
N
0.859
Cagra.1671s0410
Capsella grandiflora
Cagra.1671s0410
N
0.838
Cagra.9128s0007
Capsella grandiflora
Cagra.9128s0007
N
0.848
Carubv10010390m.g
Capsella rubella
Carubv10010390m.g
N
0.848
Carubv10023989m.g
Capsella rubella
Carubv10023989m.g
N
0.848
Ciclev10032782m.g
Citrus clementina
Ciclev10032782m.g
N
0.869
Eucgr.E02410
Eucalyptus grandis
Eucgr.E02410
N
0.787
evm.TU.supercontig_53.26
Carica papaya
evm.TU.supercontig_53.26
N
0.869
gene23226-v1.0-hybrid
Fragaria vesca
gene23226-v1.0-hybrid
N
0.838
Gorai.012G094200
Gossypium raimondii
Gorai.012G094200
N
0.838
Gorai.012G185900
Gossypium raimondii
Gorai.012G185900
N
0.774
MDP0000879799
Malus domestica
MDP0000879799
N
0.838
Pavir.Ia03612
Panicum virgatum
Pavir.Ia03612
N
0.768
Pavir.Ib01336
Panicum virgatum
Pavir.Ib01336
N
0.768
Thhalv10008781m.g
Eutrema salsugineum
Thhalv10008781m.g
N
0.859
Thhalv10017165m.g
Eutrema salsugineum
Thhalv10017165m.g
N
0.838
chr3.CM0246.260.nc
Lotus japonicus
chr3.CM0246.260.nc
N
0.879