CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_016952
(
Theobroma cacao
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
TCM_016952
T246127_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.889
0.889
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.727
0.727
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY02489
LOB
10
108
PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVPPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVMRLQRELDATNA
Links
Other
LOB
family TFs
Other
Theobroma cacao
TFs
202 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0001s35280
Populus trichocarpa
POPTR_0001s35280
I
0.970
PRUPE_ppa018381mg
Prunus persica
PRUPE_ppa018381mg
I
0.970
Pm015649
Prunus mume
Pm015649
I
0.970
SapurV1A.1328s0080
Salix purpurea
SapurV1A.1328s0080
I
0.970
PK26472.1
Cannabis sativa
PK26472.1
I
0.970
MTR_7g033800
Medicago truncatula
MTR_7g033800
I
0.960
29917.m001993
Ricinus communis
29917.m001993
I
0.960
cassava12464.valid.m1
Manihot esculenta
cassava12464.valid.m1
I
0.960
evm.TU.supercontig_108.62
Carica papaya
evm.TU.supercontig_108.62
I
0.960
Gorai.012G063800
Gossypium raimondii
Gorai.012G063800
I
0.960
MDP0000848210
Malus domestica
MDP0000848210
I
0.960
GLYMA16G07770
Glycine max
GLYMA16G07770
I
0.949
GLYMA19G12650
Glycine max
GLYMA19G12650
I
0.949
Ca_24372
Cicer arietinum
Ca_24372
I
0.949
Ciclev10017006m.g
Citrus clementina
Ciclev10017006m.g
I
0.949
Eucgr.I01750
Eucalyptus grandis
Eucgr.I01750
I
0.949
Gorai.006G033100
Gossypium raimondii
Gorai.006G033100
I
0.949
orange1.1g031572m.g
Citrus sinensis
orange1.1g031572m.g
I
0.949
GLYMA05G08870
Glycine max
GLYMA05G08870
I
0.939
GLYMA19G00390
Glycine max
GLYMA19G00390
I
0.939
Cucsa.011300
Cucumis sativus
Cucsa.011300
I
0.939
Eucgr.J02237
Eucalyptus grandis
Eucgr.J02237
I
0.939
gene28478-v1.0-hybrid
Fragaria vesca
gene28478-v1.0-hybrid
I
0.939
LjSGA_042891.1
Lotus japonicus
LjSGA_042891.1
I
0.939
LBD25
Vitis vinifera
VIT_14s0066g00680
I
0.929
Cla010600
Citrullus lanatus
Cla010600
I
0.929
Cla017388
Citrullus lanatus
Cla017388
I
0.929
Cucsa.339980
Cucumis sativus
Cucsa.339980
I
0.929
Lus10022264.g
Linum usitatissimum
Lus10022264.g
I
0.929
PGSC0003DMG400012629
Solanum tuberosum
PGSC0003DMG400012629
I
0.919
Aquca_061_00084
Aquilegia coerulea
Aquca_061_00084
I
0.919
Gorai.007G075700
Gossypium raimondii
Gorai.007G075700
I
0.909
GLYMA05G02530
Glycine max
GLYMA05G02530
I
0.899
GLYMA17G09380
Glycine max
GLYMA17G09380
I
0.899
Solyc02g086480.1
Solanum lycopersicum
Solyc02g086480.1
I
0.899
TCM_012190
Theobroma cacao
TCM_012190
I
0.899
LOB
Vitis vinifera
VIT_17s0000g09010
I
0.899
Cla019510
Citrullus lanatus
Cla019510
I
0.899
30147.m013890
Ricinus communis
30147.m013890
I
0.899
cassava19770.m1
Manihot esculenta
cassava19770.m1
I
0.899
cassava33952.m1
Manihot esculenta
cassava33952.m1
I
0.899
Cucsa.196600
Cucumis sativus
Cucsa.196600
I
0.899
evm.TU.supercontig_110.17
Carica papaya
evm.TU.supercontig_110.17
I
0.899
MDP0000130659
Malus domestica
MDP0000130659
I
0.899
MDP0000254288
Malus domestica
MDP0000254288
I
0.899
chr2.LjT30P12.80.nc
Lotus japonicus
chr2.LjT30P12.80.nc
I
0.899
LOB
Arabidopsis thaliana
AT5G63090
D
0.889
Bo3g104760
Brassica oleracea
Bo3g104760
I
0.889
Bra038606
Brassica rapa
Bra038606
I
0.889
MTR_4g105170
Medicago truncatula
MTR_4g105170
I
0.889
MTR_6g005070
Medicago truncatula
MTR_6g005070
I
0.889
POPTR_0012s08540
Populus trichocarpa
POPTR_0012s08540
I
0.889
POPTR_0015s09370
Populus trichocarpa
POPTR_0015s09370
I
0.889
PRUPE_ppa023059mg
Prunus persica
PRUPE_ppa023059mg
I
0.889
LOB
Arabidopsis lyrata
scaffold_802995.1
I
0.889
Ca_08824
Cicer arietinum
Ca_08824
I
0.889
Pm024312
Prunus mume
Pm024312
I
0.889
Bostr.0568s0498
Boechera stricta
Bostr.0568s0498
I
0.889
Cagra.5118s0045
Capsella grandiflora
Cagra.5118s0045
I
0.889
Carubv10028397m.g
Capsella rubella
Carubv10028397m.g
I
0.889
Lus10027676.g
Linum usitatissimum
Lus10027676.g
I
0.889
Lus10039940.g
Linum usitatissimum
Lus10039940.g
I
0.889
SapurV1A.0011s0490
Salix purpurea
SapurV1A.0011s0490
I
0.889
SapurV1A.1247s0030
Salix purpurea
SapurV1A.1247s0030
I
0.889
Thhalv10004979m.g
Eutrema salsugineum
Thhalv10004979m.g
I
0.889
chr1.CM0171.410.nc
Lotus japonicus
chr1.CM0171.410.nc
I
0.889
LBD25
Arabidopsis thaliana
AT3G27650
I
0.879
Bo9g017470
Brassica oleracea
Bo9g017470
I
0.879
GLYMA06G18861
Glycine max
GLYMA06G18861
I
0.879
MTR_3g077240
Medicago truncatula
MTR_3g077240
I
0.879
PGSC0003DMG400006914
Solanum tuberosum
PGSC0003DMG400006914
I
0.879
Solyc02g067800.2
Solanum lycopersicum
Solyc02g067800.2
I
0.879
Aquca_011_00559
Aquilegia coerulea
Aquca_011_00559
I
0.879
Cagra.5575s0004
Capsella grandiflora
Cagra.5575s0004
I
0.879
Carubv10018238m.g
Capsella rubella
Carubv10018238m.g
I
0.879
Eucgr.K02809
Eucalyptus grandis
Eucgr.K02809
I
0.879
gene31797-v1.0-hybrid
Fragaria vesca
gene31797-v1.0-hybrid
I
0.879
PK21510.1
Cannabis sativa
PK21510.1
I
0.879
AC233943.1_FG002
Zea mays
AC233943.1_FG002
I
0.869
F775_25656
Aegilops tauschii
F775_25656
I
0.869
LBD25
Arabidopsis lyrata
fgenesh2_kg.5__545__AT3G27650.1
I
0.869
GLYMA04G36080
Glycine max
GLYMA04G36080
I
0.869
LPERR01G04140
Leersia perrieri
LPERR01G04140
I
0.869
MTR_6g005080
Medicago truncatula
MTR_6g005080
I
0.869
OB01G14220
Oryza brachyantha
OB01G14220
I
0.869
OMERI01G04420
Oryza meridionalis
OMERI01G04420
I
0.869
PGSC0003DMG400018112
Solanum tuberosum
PGSC0003DMG400018112
I
0.869
Sb03g004590
Sorghum bicolor
Sb03g004590
I
0.869
Si002632m.g
Setaria italica
Si002632m.g
I
0.869
Ca_07463
Cicer arietinum
Ca_07463
I
0.869
mgf024603m
Mimulus guttatus
mgf024603m
I
0.869
Bostr.0556s0446
Boechera stricta
Bostr.0556s0446
I
0.869
Pavir.Eb00458
Panicum virgatum
Pavir.Eb00458
I
0.869
Pavir.J38993
Panicum virgatum
Pavir.J38993
I
0.869
Thhalv10005120m.g
Eutrema salsugineum
Thhalv10005120m.g
I
0.869
Bo9g008330
Brassica oleracea
Bo9g008330
I
0.859
Bra025294
Brassica rapa
Bra025294
I
0.859
Bra035860
Brassica rapa
Bra035860
I
0.859
Bra039072
Brassica rapa
Bra039072
I
0.859
OBART01G04470
Oryza barthii
OBART01G04470
I
0.859
OGLUM01G04900
Oryza glumaepatula
OGLUM01G04900
I
0.859
ONIVA01G04930
Oryza nivara
ONIVA01G04930
I
0.859
ORGLA01G0040900
Oryza glaberrima
ORGLA01G0040900
I
0.859
ORUFI01G04670
Oryza rufipogon
ORUFI01G04670
I
0.859
OS01G0169400
Oryza sativa
OS01G0169400
I
0.859
Solyc03g112430.1
Solanum lycopersicum
Solyc03g112430.1
I
0.859
cassava3724.m1
Manihot esculenta
cassava3724.m1
I
0.859
Bo7g085860
Brassica oleracea
Bo7g085860
I
0.848
BRADI2G04270
Brachypodium distachyon
BRADI2G04270
I
0.848
mgf003146m
Mimulus guttatus
mgf003146m
I
0.848
Ciclev10022371m.g
Citrus clementina
Ciclev10022371m.g
I
0.848
orange1.1g036845m.g
Citrus sinensis
orange1.1g036845m.g
I
0.848
VIT_00s0215g00010
Vitis vinifera
VIT_00s0215g00010
I
0.833
Bo2g144870
Brassica oleracea
Bo2g144870
I
0.828
Bra033019
Brassica rapa
Bra033019
I
0.828
Cucsa.098680
Cucumis sativus
Cucsa.098680
I
0.828
mgf016361m
Mimulus guttatus
mgf016361m
I
0.828
PK18922.1
Cannabis sativa
PK18922.1
I
0.825
PGSC0003DMG400027078
Solanum tuberosum
PGSC0003DMG400027078
I
0.818
Solyc06g071660.1
Solanum lycopersicum
Solyc06g071660.1
I
0.818
SELMODRAFT_59324
Selaginella moellendorffii
SELMODRAFT_59324
I
0.808
SELMODRAFT_68988
Selaginella moellendorffii
SELMODRAFT_68988
I
0.808
Cla003499
Citrullus lanatus
Cla003499
I
0.808
GLYMA16G09720
Glycine max
GLYMA16G09720
I
0.805
F775_33210
Aegilops tauschii
F775_33210
I
0.795
TRIUR3_10339
Triticum urartu
TRIUR3_10339
I
0.792
gw1.170.36.1
Physcomitrella patens
gw1.170.36.1
I
0.788
gw1.170.40.1
Physcomitrella patens
gw1.170.40.1
I
0.788
gw1.71.84.1
Physcomitrella patens
gw1.71.84.1
I
0.778
Traes_1DL_1290B6A52
Triticum aestivum
Traes_1DL_1290B6A52
I
0.769
gw1.12.172.1
Physcomitrella patens
gw1.12.172.1
I
0.768
PK29334.1
Cannabis sativa
PK29334.1
I
0.766
GLYMA01G32340
Glycine max
GLYMA01G32340
N
0.753
LjSGA_017893.1
Lotus japonicus
LjSGA_017893.1
I
0.753
AMTR_s00066p00120340
Amborella trichopoda
AMTR_s00066p00120340
I
0.747
PGSC0003DMG400000974
Solanum tuberosum
PGSC0003DMG400000974
I
0.747
Solyc03g063140.2
Solanum lycopersicum
Solyc03g063140.2
I
0.747
AS2
Vitis vinifera
VIT_00s0340g00090
I
0.747
PK21617.1
Cannabis sativa
PK21617.1
I
0.739
GLYMA13G26020
Glycine max
GLYMA13G26020
I
0.737
GLYMA15G36310
Glycine max
GLYMA15G36310
I
0.737
MTR_8g040900
Medicago truncatula
MTR_8g040900
I
0.737
PRUPE_ppa027059mg
Prunus persica
PRUPE_ppa027059mg
I
0.737
Solyc11g008830.1
Solanum lycopersicum
Solyc11g008830.1
I
0.737
Ca_20200
Cicer arietinum
Ca_20200
I
0.737
Cla005851
Citrullus lanatus
Cla005851
I
0.737
Cucsa.178830
Cucumis sativus
Cucsa.178830
I
0.737
mgf014755m
Mimulus guttatus
mgf014755m
I
0.737
Aquca_058_00006
Aquilegia coerulea
Aquca_058_00006
I
0.737
Eucgr.C02148
Eucalyptus grandis
Eucgr.C02148
I
0.737
gene21541-v1.0-hybrid
Fragaria vesca
gene21541-v1.0-hybrid
I
0.737
MDP0000273432
Malus domestica
MDP0000273432
I
0.737
LBD6
Arabidopsis thaliana
AT1G65620
D
0.727
Bo2g051420
Brassica oleracea
Bo2g051420
I
0.727
Bra039733
Brassica rapa
Bra039733
I
0.727
AS2
Arabidopsis lyrata
fgenesh2_kg.2__796__AT1G65620.2
I
0.727
TCM_024217
Theobroma cacao
TCM_024217
I
0.727
29929.m004500
Ricinus communis
29929.m004500
I
0.727
cassava1141.valid.m1
Manihot esculenta
cassava1141.valid.m1
I
0.727
Bostr.26959s0351
Boechera stricta
Bostr.26959s0351
I
0.727
Cagra.10809s0001
Capsella grandiflora
Cagra.10809s0001
I
0.727
Carubv10020974m.g
Capsella rubella
Carubv10020974m.g
I
0.727
evm.TU.supercontig_39.110
Carica papaya
evm.TU.supercontig_39.110
I
0.727
MDP0000643326
Malus domestica
MDP0000643326
I
0.727
Thhalv10019572m.g
Eutrema salsugineum
Thhalv10019572m.g
I
0.727
BGIOSGA018046
Oryza indica
BGIOSGA018046
I
0.717
F775_21760
Aegilops tauschii
F775_21760
I
0.717
MLOC_61156
Hordeum vulgare
MLOC_61156
I
0.717
OB05G24560
Oryza brachyantha
OB05G24560
I
0.717
OGLUM05G17630
Oryza glumaepatula
OGLUM05G17630
I
0.717
ORGLA05G0143500
Oryza glaberrima
ORGLA05G0143500
I
0.717
ORUFI05G17830
Oryza rufipogon
ORUFI05G17830
I
0.717
OS05G0417000
Oryza sativa
OS05G0417000
I
0.717
POPTR_0008s07930
Populus trichocarpa
POPTR_0008s07930
I
0.717
POPTR_0010s18460
Populus trichocarpa
POPTR_0010s18460
I
0.717
Traes_1AL_4B89B33E3
Triticum aestivum
Traes_1AL_4B89B33E3
I
0.717
cassava32690.m1
Manihot esculenta
cassava32690.m1
I
0.717
Aquca_007_00083
Aquilegia coerulea
Aquca_007_00083
I
0.717
Ciclev10017910m.g
Citrus clementina
Ciclev10017910m.g
I
0.717
Gorai.007G350300
Gossypium raimondii
Gorai.007G350300
I
0.717
orange1.1g027472m.g
Citrus sinensis
orange1.1g027472m.g
I
0.717
SapurV1A.0093s0490
Salix purpurea
SapurV1A.0093s0490
I
0.717
SapurV1A.0164s0090
Salix purpurea
SapurV1A.0164s0090
I
0.717
GSMUA_Achr10G20760_001
Musa acuminata
GSMUA_Achr10G20760_001
I
0.713
OLONG_009404
Oryza longistaminata
OLONG_009404
I
0.709
BRADI2G25270
Brachypodium distachyon
BRADI2G25270
I
0.707
GLYMA02G40080
Glycine max
GLYMA02G40080
I
0.707
GLYMA11G17890
Glycine max
GLYMA11G17890
I
0.707
MTR_3g073690
Medicago truncatula
MTR_3g073690
I
0.707
MTR_5g083230
Medicago truncatula
MTR_5g083230
I
0.707
POPTR_0009s08060
Populus trichocarpa
POPTR_0009s08060
I
0.707
Si036905m.g
Setaria italica
Si036905m.g
I
0.707
Solyc06g007390.2
Solanum lycopersicum
Solyc06g007390.2
I
0.707
TCM_000560
Theobroma cacao
TCM_000560
I
0.707
VIT_16s0022g02050
Vitis vinifera
VIT_16s0022g02050
I
0.707
Cucsa.250570
Cucumis sativus
Cucsa.250570
I
0.707
Gorai.007G210500
Gossypium raimondii
Gorai.007G210500
I
0.707
Gorai.011G104600
Gossypium raimondii
Gorai.011G104600
I
0.707
Lus10013610.g
Linum usitatissimum
Lus10013610.g
I
0.707
MDP0000194766
Malus domestica
MDP0000194766
I
0.707
SapurV1A.0042s0120
Salix purpurea
SapurV1A.0042s0120
I
0.707
SapurV1A.0566s0080
Salix purpurea
SapurV1A.0566s0080
I
0.707