CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla015094
(
Citrullus lanatus
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Cla015094
T246348_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.727
0.727
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.727
0.727
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.707
0.707
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.707
0.707
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.707
0.707
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla015094
LOB
12
111
PCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLRE
Links
Other
LOB
family TFs
Other
Citrullus lanatus
TFs
212 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cucsa.388160
Cucumis sativus
Cucsa.388160
I
0.980
GLYMA13G18210
Glycine max
GLYMA13G18210
I
0.869
28428.m000040
Ricinus communis
28428.m000040
I
0.869
cassava40664.m1
Manihot esculenta
cassava40664.m1
I
0.869
cassava41632.m1
Manihot esculenta
cassava41632.m1
I
0.869
GLYMA10G04050
Glycine max
GLYMA10G04050
I
0.859
MTR_7g096610
Medicago truncatula
MTR_7g096610
I
0.859
PRUPE_ppa025889mg
Prunus persica
PRUPE_ppa025889mg
I
0.859
evm.TU.supercontig_50.42
Carica papaya
evm.TU.supercontig_50.42
I
0.859
Lus10000613.g
Linum usitatissimum
Lus10000613.g
I
0.859
Lus10033873.g
Linum usitatissimum
Lus10033873.g
I
0.859
SapurV1A.0006s0970
Salix purpurea
SapurV1A.0006s0970
I
0.859
MTR_1g070205
Medicago truncatula
MTR_1g070205
I
0.848
POPTR_0002s04200
Populus trichocarpa
POPTR_0002s04200
I
0.848
Pm020628
Prunus mume
Pm020628
I
0.848
mgf020773m
Mimulus guttatus
mgf020773m
I
0.848
Ciclev10023341m.g
Citrus clementina
Ciclev10023341m.g
I
0.848
Eucgr.B01529
Eucalyptus grandis
Eucgr.B01529
I
0.848
gene08253-v1.0-hybrid
Fragaria vesca
gene08253-v1.0-hybrid
I
0.848
Gorai.007G144500
Gossypium raimondii
Gorai.007G144500
I
0.848
orange1.1g027399m.g
Citrus sinensis
orange1.1g027399m.g
I
0.848
LjT35F15.90.nd
Lotus japonicus
LjT35F15.90.nd
I
0.848
GLYMA03G31860
Glycine max
GLYMA03G31860
I
0.838
VIT_07s0005g03020
Vitis vinifera
VIT_07s0005g03020
I
0.838
GLYMA19G34600
Glycine max
GLYMA19G34600
I
0.828
Ca_07763
Cicer arietinum
Ca_07763
I
0.828
Cla006087
Citrullus lanatus
Cla006087
I
0.828
Aquca_034_00400
Aquilegia coerulea
Aquca_034_00400
I
0.828
Gorai.001G251700
Gossypium raimondii
Gorai.001G251700
I
0.828
PGSC0003DMG400009716
Solanum tuberosum
PGSC0003DMG400009716
I
0.818
Solyc09g066270.2
Solanum lycopersicum
Solyc09g066270.2
I
0.818
Ca_12214
Cicer arietinum
Ca_12214
I
0.818
Cucsa.053450
Cucumis sativus
Cucsa.053450
I
0.818
Bostr.20903s0070
Boechera stricta
Bostr.20903s0070
I
0.818
Cagra.0686s0036
Capsella grandiflora
Cagra.0686s0036
I
0.818
Carubv10019250m.g
Capsella rubella
Carubv10019250m.g
I
0.818
Gorai.004G220000
Gossypium raimondii
Gorai.004G220000
I
0.818
TCM_004103
Theobroma cacao
TCM_004103
I
0.811
LBD29
Arabidopsis thaliana
AT3G58190
I
0.808
Bo8g092560
Brassica oleracea
Bo8g092560
I
0.808
LBD29
Arabidopsis lyrata
fgenesh2_kg.5__2263__AT3G58190.1
I
0.808
Gorai.004G073300
Gossypium raimondii
Gorai.004G073300
I
0.808
Thhalv10006226m.g
Eutrema salsugineum
Thhalv10006226m.g
I
0.808
BGIOSGA011445
Oryza indica
BGIOSGA011445
I
0.798
Bo4g108600
Brassica oleracea
Bo4g108600
I
0.798
Bra014581
Brassica rapa
Bra014581
I
0.798
GRMZM2G092542
Zea mays
GRMZM2G092542
I
0.798
GSMUA_Achr8G14330_001
Musa acuminata
GSMUA_Achr8G14330_001
I
0.798
LPERR03G03470
Leersia perrieri
LPERR03G03470
I
0.798
OB03G13890
Oryza brachyantha
OB03G13890
I
0.798
OB08G30680
Oryza brachyantha
OB08G30680
I
0.798
OBART03G03830
Oryza barthii
OBART03G03830
I
0.798
OMERI07G01660
Oryza meridionalis
OMERI07G01660
I
0.798
ONIVA03G03580
Oryza nivara
ONIVA03G03580
I
0.798
OPUNC03G03520
Oryza punctata
OPUNC03G03520
I
0.798
ORGLA03G0035900
Oryza glaberrima
ORGLA03G0035900
I
0.798
ORUFI03G03550
Oryza rufipogon
ORUFI03G03550
I
0.798
OS03G0149100
Oryza sativa
OS03G0149100
I
0.798
PRUPE_ppa019939mg
Prunus persica
PRUPE_ppa019939mg
I
0.798
Sb01g046990
Sorghum bicolor
Sb01g046990
I
0.798
Si040019m.g
Setaria italica
Si040019m.g
I
0.798
Pm020627
Prunus mume
Pm020627
I
0.798
Aquca_017_00693
Aquilegia coerulea
Aquca_017_00693
I
0.798
Pavir.Ia04220
Panicum virgatum
Pavir.Ia04220
I
0.798
Pavir.Ib00283
Panicum virgatum
Pavir.Ib00283
I
0.798
BRADI3G12550
Brachypodium distachyon
BRADI3G12550
I
0.788
GSMUA_Achr10G06700_001
Musa acuminata
GSMUA_Achr10G06700_001
I
0.788
GSMUA_Achr1G06580_001
Musa acuminata
GSMUA_Achr1G06580_001
I
0.788
GSMUA_AchrUn_randomG07730_001
Musa acuminata
GSMUA_AchrUn_randomG07730_001
I
0.788
Gorai.004G073200
Gossypium raimondii
Gorai.004G073200
I
0.788
BGIOSGA026473
Oryza indica
BGIOSGA026473
I
0.778
Bra007385
Brassica rapa
Bra007385
N
0.778
GSMUA_AchrUn_randomG23710_001
Musa acuminata
GSMUA_AchrUn_randomG23710_001
I
0.778
LPERR08G20530
Leersia perrieri
LPERR08G20530
I
0.778
MLOC_10784
Hordeum vulgare
MLOC_10784
I
0.778
OBART08G23860
Oryza barthii
OBART08G23860
I
0.778
OGLUM08G25340
Oryza glumaepatula
OGLUM08G25340
I
0.778
OLONG_010223
Oryza longistaminata
OLONG_010223
I
0.778
OMERI08G18670
Oryza meridionalis
OMERI08G18670
I
0.778
ONIVA09G01330
Oryza nivara
ONIVA09G01330
I
0.778
OPUNC08G21770
Oryza punctata
OPUNC08G21770
I
0.778
ORGLA08G0192400
Oryza glaberrima
ORGLA08G0192400
I
0.778
ORUFI08G26340
Oryza rufipogon
ORUFI08G26340
I
0.778
OS08G0563400
Oryza sativa
OS08G0563400
I
0.778
Traes_4BL_A4D0F4AD6
Triticum aestivum
Traes_4BL_A4D0F4AD6
I
0.778
Traes_4DL_43D63ABE3
Triticum aestivum
Traes_4DL_43D63ABE3
I
0.778
gene08254-v1.0-hybrid
Fragaria vesca
gene08254-v1.0-hybrid
I
0.778
GSMUA_Achr4G25190_001
Musa acuminata
GSMUA_Achr4G25190_001
I
0.768
Sb07g023810
Sorghum bicolor
Sb07g023810
I
0.768
Si015156m.g
Setaria italica
Si015156m.g
I
0.768
Traes_4AL_CAF4E16B5
Triticum aestivum
Traes_4AL_CAF4E16B5
I
0.768
Pavir.Fa00011
Panicum virgatum
Pavir.Fa00011
I
0.768
BRADI1G75110
Brachypodium distachyon
BRADI1G75110
I
0.758
GSMUA_Achr11G02110_001
Musa acuminata
GSMUA_Achr11G02110_001
I
0.758
Pavir.J03376
Panicum virgatum
Pavir.J03376
I
0.758
AC149818.2_FG009
Zea mays
AC149818.2_FG009
I
0.747
LBD17
Arabidopsis thaliana
AT2G42440
N
0.747
Bo4g191540
Brassica oleracea
Bo4g191540
N
0.747
Bra016876
Brassica rapa
Bra016876
N
0.747
F775_22967
Aegilops tauschii
F775_22967
I
0.747
GSMUA_Achr1G01360_001
Musa acuminata
GSMUA_Achr1G01360_001
I
0.747
MLOC_52276
Hordeum vulgare
MLOC_52276
I
0.747
Traes_4BS_5D9291539
Triticum aestivum
Traes_4BS_5D9291539
I
0.747
Traes_4DS_11C3B0459
Triticum aestivum
Traes_4DS_11C3B0459
I
0.747
TRIUR3_07751
Triticum urartu
TRIUR3_07751
I
0.747
Thhalv10017299m.g
Eutrema salsugineum
Thhalv10017299m.g
N
0.747
Thhalv10017903m.g
Eutrema salsugineum
Thhalv10017903m.g
N
0.747
Bo4g052270
Brassica oleracea
Bo4g052270
N
0.737
Bra021737
Brassica rapa
Bra021737
N
0.737
F775_02052
Aegilops tauschii
F775_02052
I
0.737
LBD14
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_4001244
N
0.737
fgenesh1_pg.C_scaffold_4002383
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_4002383
N
0.737
OGLUM03G03710
Oryza glumaepatula
OGLUM03G03710
I
0.737
OLONG_020841
Oryza longistaminata
OLONG_020841
I
0.737
cassava28659.m1
Manihot esculenta
cassava28659.m1
I
0.737
Bostr.25993s0537
Boechera stricta
Bostr.25993s0537
I
0.737
LBD14
Arabidopsis thaliana
AT2G31310
N
0.727
LBD18
Arabidopsis thaliana
AT2G45420
D
0.727
BGIOSGA005344
Oryza indica
BGIOSGA005344
I
0.727
Bo4g024620
Brassica oleracea
Bo4g024620
I
0.727
Bra004910
Brassica rapa
Bra004910
I
0.727
LBD18
Arabidopsis lyrata
fgenesh2_kg.4__2737__AT2G45420.1
I
0.727
LPERR02G31040
Leersia perrieri
LPERR02G31040
I
0.727
OGLUM02G38740
Oryza glumaepatula
OGLUM02G38740
I
0.727
OMERI02G35350
Oryza meridionalis
OMERI02G35350
I
0.727
ONIVA02G40360
Oryza nivara
ONIVA02G40360
I
0.727
ORGLA02G0327800
Oryza glaberrima
ORGLA02G0327800
I
0.727
ORUFI02G39110
Oryza rufipogon
ORUFI02G39110
I
0.727
OS02G0820500
Oryza sativa
OS02G0820500
I
0.727
Traes_6BS_179B5B6E1
Triticum aestivum
Traes_6BS_179B5B6E1
I
0.727
LBD30
Vitis vinifera
VIT_15s0048g00830
I
0.727
30174.m008898
Ricinus communis
30174.m008898
I
0.727
cassava36912.valid.m1
Manihot esculenta
cassava36912.valid.m1
I
0.727
Bostr.24513s0089
Boechera stricta
Bostr.24513s0089
N
0.727
Bostr.25993s0233
Boechera stricta
Bostr.25993s0233
I
0.727
Cagra.0698s0021
Capsella grandiflora
Cagra.0698s0021
I
0.727
Cagra.6952s0010
Capsella grandiflora
Cagra.6952s0010
N
0.727
Carubv10025050m.g
Capsella rubella
Carubv10025050m.g
I
0.727
Ciclev10021992m.g
Citrus clementina
Ciclev10021992m.g
I
0.727
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.727
Gorai.008G114400
Gossypium raimondii
Gorai.008G114400
I
0.727
orange1.1g036534m.g
Citrus sinensis
orange1.1g036534m.g
I
0.727
Thhalv10001791m.g
Eutrema salsugineum
Thhalv10001791m.g
I
0.727
Bo3g036000
Brassica oleracea
Bo3g036000
I
0.720
Bo4g016000
Brassica oleracea
Bo4g016000
I
0.717
Bo4g191530
Brassica oleracea
Bo4g191530
I
0.717
Bo4g195520
Brassica oleracea
Bo4g195520
I
0.717
Bra004693
Brassica rapa
Bra004693
I
0.717
Bra040311
Brassica rapa
Bra040311
I
0.717
GLYMA01G34540
Glycine max
GLYMA01G34540
I
0.717
GRMZM2G075499
Zea mays
GRMZM2G075499
I
0.717
GSMUA_Achr1G02520_001
Musa acuminata
GSMUA_Achr1G02520_001
I
0.717
GSMUA_Achr2G11240_001
Musa acuminata
GSMUA_Achr2G11240_001
I
0.717
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.717
OB02G44330
Oryza brachyantha
OB02G44330
I
0.717
OPUNC02G34750
Oryza punctata
OPUNC02G34750
I
0.717
PRUPE_ppa010383mg
Prunus persica
PRUPE_ppa010383mg
I
0.717
Sb04g037550
Sorghum bicolor
Sb04g037550
I
0.717
Traes_4AL_BB3F89030
Triticum aestivum
Traes_4AL_BB3F89030
N
0.717
Cla007068
Citrullus lanatus
Cla007068
I
0.717
Pm017936
Prunus mume
Pm017936
I
0.717
Cucsa.362840
Cucumis sativus
Cucsa.362840
I
0.717
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.717
Bostr.25993s0538
Boechera stricta
Bostr.25993s0538
I
0.717
Cagra.1261s0013
Capsella grandiflora
Cagra.1261s0013
I
0.717
Cagra.2636s0029
Capsella grandiflora
Cagra.2636s0029
I
0.717
Carubv10025067m.g
Capsella rubella
Carubv10025067m.g
N
0.717
Carubv10025548m.g
Capsella rubella
Carubv10025548m.g
I
0.717
evm.TU.supercontig_50.43
Carica papaya
evm.TU.supercontig_50.43
I
0.717
Gorai.004G161100
Gossypium raimondii
Gorai.004G161100
I
0.717
Pavir.Aa00097
Panicum virgatum
Pavir.Aa00097
I
0.717
Pavir.J39638
Panicum virgatum
Pavir.J39638
I
0.717
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.717
Thhalv10017158m.g
Eutrema salsugineum
Thhalv10017158m.g
I
0.717
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.707
LBD16
Arabidopsis thaliana
AT2G42430
D
0.707
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.707
Bo3g036030
Brassica oleracea
Bo3g036030
I
0.707
Bra000257
Brassica rapa
Bra000257
I
0.707
Bra016877
Brassica rapa
Bra016877
I
0.707
BRADI1G68170
Brachypodium distachyon
BRADI1G68170
I
0.707
BRADI3G55680
Brachypodium distachyon
BRADI3G55680
I
0.707
GLYMA03G02620
Glycine max
GLYMA03G02620
I
0.707
GLYMA10G04040
Glycine max
GLYMA10G04040
I
0.707
GRMZM2G110913
Zea mays
GRMZM2G110913
I
0.707
GRMZM2G150594
Zea mays
GRMZM2G150594
I
0.707
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.707
MLOC_10783
Hordeum vulgare
MLOC_10783
N
0.707
MLOC_61947
Hordeum vulgare
MLOC_61947
I
0.707
OBART03G10450
Oryza barthii
OBART03G10450
I
0.707
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.707
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.707
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.707
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.707
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.707
OS03G0246900
Oryza sativa
OS03G0246900
I
0.707
PRUPE_ppa025349mg
Prunus persica
PRUPE_ppa025349mg
I
0.707
Sb01g041130
Sorghum bicolor
Sb01g041130
I
0.707
LBD16
Arabidopsis lyrata
scaffold_403099.1
I
0.707
Si019578m.g
Setaria italica
Si019578m.g
I
0.707
Traes_4AL_3BA1D51E2
Triticum aestivum
Traes_4AL_3BA1D51E2
N
0.707
Traes_4DL_05F87867C
Triticum aestivum
Traes_4DL_05F87867C
N
0.707
Traes_6AL_D6045E37C
Triticum aestivum
Traes_6AL_D6045E37C
I
0.707
Traes_6AS_4EEA3E388
Triticum aestivum
Traes_6AS_4EEA3E388
I
0.707
Traes_6DL_850266B2A
Triticum aestivum
Traes_6DL_850266B2A
I
0.707
TRIUR3_01477
Triticum urartu
TRIUR3_01477
I
0.707
Cla006088
Citrullus lanatus
Cla006088
I
0.707
Cucsa.053440
Cucumis sativus
Cucsa.053440
I
0.707
Bostr.14547s0030
Boechera stricta
Bostr.14547s0030
I
0.707
Carubv10002489m.g
Capsella rubella
Carubv10002489m.g
I
0.707
Pavir.Ia02614
Panicum virgatum
Pavir.Ia02614
I
0.707
Pavir.J34872
Panicum virgatum
Pavir.J34872
I
0.707