CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm015540
(
Prunus mume
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Pm015540
T246375_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm015540
LOB
4
72
SCNGCRILRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPGQYLSFVHF
Links
Other
LOB
family TFs
Other
Prunus mume
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28152.m000908
Ricinus communis
28152.m000908
I
28637.m000203
Ricinus communis
28637.m000203
I
29661.m000908
Ricinus communis
29661.m000908
I
30147.m014242
Ricinus communis
30147.m014242
I
30170.m013751
Ricinus communis
30170.m013751
I
ZAT1
Arabidopsis thaliana
AT1G02030
D
ZAT10
Arabidopsis thaliana
AT1G27730
D
ZAT11
Arabidopsis thaliana
AT2G37430
I
AZF2
Arabidopsis thaliana
AT3G19580
D
AT3G53600
Arabidopsis thaliana
AT3G53600
D
ZAT3
Arabidopsis thaliana
AT4G35280
I
ZAT6
Arabidopsis thaliana
AT5G04340
D
BGIOSGA026045
Oryza indica
BGIOSGA026045
N
Bo00576s170
Brassica oleracea
Bo00576s170
I
Bo1g081350
Brassica oleracea
Bo1g081350
I
Bo1g113530
Brassica oleracea
Bo1g113530
I
Bo3g142840
Brassica oleracea
Bo3g142840
I
Bo4g030570
Brassica oleracea
Bo4g030570
I
Bo4g186920
Brassica oleracea
Bo4g186920
I
Bo5g052290
Brassica oleracea
Bo5g052290
I
Bo5g113850
Brassica oleracea
Bo5g113850
I
Bo6g067580
Brassica oleracea
Bo6g067580
I
Bo7g048650
Brassica oleracea
Bo7g048650
I
Bo7g065200
Brassica oleracea
Bo7g065200
I
Bo7g117320
Brassica oleracea
Bo7g117320
I
Bo9g181170
Brassica oleracea
Bo9g181170
I
Bostr.11793s0034
Boechera stricta
Bostr.11793s0034
I
Bostr.15697s0099
Boechera stricta
Bostr.15697s0099
I
Bostr.19424s0704
Boechera stricta
Bostr.19424s0704
I
Bostr.2128s0015
Boechera stricta
Bostr.2128s0015
I
Bostr.26675s0176
Boechera stricta
Bostr.26675s0176
I
Bostr.3148s0159
Boechera stricta
Bostr.3148s0159
I
Bostr.5325s0123
Boechera stricta
Bostr.5325s0123
I
Bostr.7867s1389
Boechera stricta
Bostr.7867s1389
I
Bra003148
Brassica rapa
Bra003148
I
Bra005197
Brassica rapa
Bra005197
I
Bra009464
Brassica rapa
Bra009464
I
Bra010922
Brassica rapa
Bra010922
I
Bra012914
Brassica rapa
Bra012914
I
Bra017188
Brassica rapa
Bra017188
I
Bra017706
Brassica rapa
Bra017706
I
Bra018817
Brassica rapa
Bra018817
I
Bra022436
Brassica rapa
Bra022436
I
Bra029985
Brassica rapa
Bra029985
I
Bra030981
Brassica rapa
Bra030981
I
Bra032845
Brassica rapa
Bra032845
I
Bra033666
Brassica rapa
Bra033666
I
Bra038219
Brassica rapa
Bra038219
I
Bra039806
Brassica rapa
Bra039806
I
BRADI1G14750
Brachypodium distachyon
BRADI1G14750
I
BRADI1G22940
Brachypodium distachyon
BRADI1G22940
N
BRADI4G03340
Brachypodium distachyon
BRADI4G03340
I
BRADI4G03410
Brachypodium distachyon
BRADI4G03410
I
Cagra.0612s0086
Capsella grandiflora
Cagra.0612s0086
I
Cagra.0666s0001
Capsella grandiflora
Cagra.0666s0001
I
Cagra.2350s0072
Capsella grandiflora
Cagra.2350s0072
I
Cagra.6943s0031
Capsella grandiflora
Cagra.6943s0031
I
Cagra.9217s0012
Capsella grandiflora
Cagra.9217s0012
I
Carubv10001868m.g
Capsella rubella
Carubv10001868m.g
I
Carubv10014391m.g
Capsella rubella
Carubv10014391m.g
I
Carubv10018114m.g
Capsella rubella
Carubv10018114m.g
I
Carubv10024141m.g
Capsella rubella
Carubv10024141m.g
I
cassava12475.valid.m1
Manihot esculenta
cassava12475.valid.m1
I
cassava21316.m1
Manihot esculenta
cassava21316.m1
I
cassava32957.m1
Manihot esculenta
cassava32957.m1
I
cassava35212.m1
Manihot esculenta
cassava35212.m1
I
cassava35732.valid.m1
Manihot esculenta
cassava35732.valid.m1
I
cassava43667.valid.m1
Manihot esculenta
cassava43667.valid.m1
I
Ca_01586
Cicer arietinum
Ca_01586
I
Ca_05641
Cicer arietinum
Ca_05641
I
Ca_18364
Cicer arietinum
Ca_18364
I
chr1.CM0050.50.nc
Lotus japonicus
chr1.CM0050.50.nc
I
chr1.LjT45O14.140.nd
Lotus japonicus
chr1.LjT45O14.140.nd
I
chr5.CM0096.480.nc
Lotus japonicus
chr5.CM0096.480.nc
I
chr5.CM0200.550.nc
Lotus japonicus
chr5.CM0200.550.nc
I
Ciclev10002297m.g
Citrus clementina
Ciclev10002297m.g
I
Ciclev10007101m.g
Citrus clementina
Ciclev10007101m.g
I
Ciclev10029065m.g
Citrus clementina
Ciclev10029065m.g
I
Cla001400
Citrullus lanatus
Cla001400
I
Cucsa.219210
Cucumis sativus
Cucsa.219210
I
Cucsa.352740
Cucumis sativus
Cucsa.352740
I
Eucgr.F02262
Eucalyptus grandis
Eucgr.F02262
I
Eucgr.G01247
Eucalyptus grandis
Eucgr.G01247
I
evm.TU.supercontig_249.7
Carica papaya
evm.TU.supercontig_249.7
I
STZ
Arabidopsis lyrata
fgenesh2_kg.1__2932__AT1G27730.1
I
AZF2
Arabidopsis lyrata
fgenesh2_kg.3__2173__AT3G19580.2
I
fgenesh2_kg.5__1736__AT3G53600.1
Arabidopsis lyrata
fgenesh2_kg.5__1736__AT3G53600.1
I
gene02558-v1.0-hybrid
Fragaria vesca
gene02558-v1.0-hybrid
I
GLYMA04G04760
Glycine max
GLYMA04G04760
I
GLYMA06G04840
Glycine max
GLYMA06G04840
I
GLYMA10G40400
Glycine max
GLYMA10G40400
I
GLYMA14G09760
Glycine max
GLYMA14G09760
I
GLYMA17G35430
Glycine max
GLYMA17G35430
I
Gorai.002G132600
Gossypium raimondii
Gorai.002G132600
I
Gorai.005G232300
Gossypium raimondii
Gorai.005G232300
I
Gorai.008G020700
Gossypium raimondii
Gorai.008G020700
I
Gorai.010G025200
Gossypium raimondii
Gorai.010G025200
I
Gorai.013G050100
Gossypium raimondii
Gorai.013G050100
I
GRMZM2G089557
Zea mays
GRMZM2G089557
N
GRMZM2G170520
Zea mays
GRMZM2G170520
I
GSMUA_Achr2G13410_001
Musa acuminata
GSMUA_Achr2G13410_001
I
GSMUA_Achr5G08730_001
Musa acuminata
GSMUA_Achr5G08730_001
I
Lus10038929.g
Linum usitatissimum
Lus10038929.g
N
MDP0000198015
Malus domestica
MDP0000198015
I
MDP0000237150
Malus domestica
MDP0000237150
I
MDP0000319225
Malus domestica
MDP0000319225
I
MDP0000573176
Malus domestica
MDP0000573176
I
MDP0000762756
Malus domestica
MDP0000762756
I
mgf006006m
Mimulus guttatus
mgf006006m
I
MLOC_51405
Hordeum vulgare
MLOC_51405
I
MLOC_54674
Hordeum vulgare
MLOC_54674
I
MTR_1g018420
Medicago truncatula
MTR_1g018420
I
MTR_1g106730
Medicago truncatula
MTR_1g106730
I
MTR_3g102980
Medicago truncatula
MTR_3g102980
I
ONIVA07G18980
Oryza nivara
ONIVA07G18980
N
OPUNC12G15600
Oryza punctata
OPUNC12G15600
I
orange1.1g024499m.g
Citrus sinensis
orange1.1g024499m.g
I
orange1.1g038669m.g
Citrus sinensis
orange1.1g038669m.g
I
ORUFI07G21440
Oryza rufipogon
ORUFI07G21440
N
OS07G0588600
Oryza sativa
OS07G0588600
N
OS12G0583700
Oryza sativa
OS12G0583700
I
Pavir.J15304
Panicum virgatum
Pavir.J15304
N
Pavir.J16973
Panicum virgatum
Pavir.J16973
N
PGSC0003DMG400002383
Solanum tuberosum
PGSC0003DMG400002383
I
PGSC0003DMG400011548
Solanum tuberosum
PGSC0003DMG400011548
I
PGSC0003DMG400015531
Solanum tuberosum
PGSC0003DMG400015531
I
PGSC0003DMG400015532
Solanum tuberosum
PGSC0003DMG400015532
I
PGSC0003DMG400015533
Solanum tuberosum
PGSC0003DMG400015533
I
PGSC0003DMG400015534
Solanum tuberosum
PGSC0003DMG400015534
I
PGSC0003DMG400015557
Solanum tuberosum
PGSC0003DMG400015557
I
PGSC0003DMG400024550
Solanum tuberosum
PGSC0003DMG400024550
I
PGSC0003DMG400034322
Solanum tuberosum
PGSC0003DMG400034322
I
PGSC0003DMG400041467
Solanum tuberosum
PGSC0003DMG400041467
I
PK10188.1
Cannabis sativa
PK10188.1
I
Pm005390
Prunus mume
Pm005390
I
Pm021284
Prunus mume
Pm021284
I
POPTR_0001s00800
Populus trichocarpa
POPTR_0001s00800
I
POPTR_0002s12010
Populus trichocarpa
POPTR_0002s12010
I
POPTR_0009s09250
Populus trichocarpa
POPTR_0009s09250
I
POPTR_0014s01760
Populus trichocarpa
POPTR_0014s01760
I
PRUPE_ppa009924mg
Prunus persica
PRUPE_ppa009924mg
I
PRUPE_ppa011060mg
Prunus persica
PRUPE_ppa011060mg
I
SapurV1A.0005s0440
Salix purpurea
SapurV1A.0005s0440
I
SapurV1A.0019s0280
Salix purpurea
SapurV1A.0019s0280
I
SapurV1A.0845s0100
Salix purpurea
SapurV1A.0845s0100
I
SapurV1A.1544s0070
Salix purpurea
SapurV1A.1544s0070
I
SapurV1A.1944s0060
Salix purpurea
SapurV1A.1944s0060
I
Sb02g038000
Sorghum bicolor
Sb02g038000
N
C2H2
Arabidopsis lyrata
scaffold_600374.1
I
scaffold_700593.1
Arabidopsis lyrata
scaffold_700593.1
I
Si010615m.g
Setaria italica
Si010615m.g
I
Si023013m.g
Setaria italica
Si023013m.g
I
Solyc01g107170.2
Solanum lycopersicum
Solyc01g107170.2
I
Solyc03g115450.1
Solanum lycopersicum
Solyc03g115450.1
I
Solyc12g088390.1
Solanum lycopersicum
Solyc12g088390.1
I
TCM_000780
Theobroma cacao
TCM_000780
I
TCM_007214
Theobroma cacao
TCM_007214
I
TCM_034720
Theobroma cacao
TCM_034720
I
Thhalv10009894m.g
Eutrema salsugineum
Thhalv10009894m.g
I
Thhalv10010909m.g
Eutrema salsugineum
Thhalv10010909m.g
I
Thhalv10010956m.g
Eutrema salsugineum
Thhalv10010956m.g
I
Thhalv10014546m.g
Eutrema salsugineum
Thhalv10014546m.g
I
Thhalv10021307m.g
Eutrema salsugineum
Thhalv10021307m.g
I
Thhalv10025912m.g
Eutrema salsugineum
Thhalv10025912m.g
I
Traes_2BS_DD07C2EE6
Triticum aestivum
Traes_2BS_DD07C2EE6
N
Traes_4BS_FE945D2FC
Triticum aestivum
Traes_4BS_FE945D2FC
I
VIT_03s0091g00690
Vitis vinifera
VIT_03s0091g00690
I
VIT_07s0129g00240
Vitis vinifera
VIT_07s0129g00240
I
VIT_18s0001g09230
Vitis vinifera
VIT_18s0001g09230
I