cassava30732.valid.m1 (Manihot esculenta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 cassava30732.valid.m1 T246461_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.909 0.909
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.848 0.848
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava30732.valid.m1 LOB 13 111

Links

Other LOB family TFs
Other Manihot esculenta TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA036535 Oryza indica BGIOSGA036535 N
OBART12G04630 Oryza barthii OBART12G04630 N
OGLUM12G05450 Oryza glumaepatula OGLUM12G05450 N
OLONG_004555 Oryza longistaminata OLONG_004555 N
ONIVA12G04320 Oryza nivara ONIVA12G04320 N
OPUNC12G04640 Oryza punctata OPUNC12G04640 N
ORGLA12G0043800 Oryza glaberrima ORGLA12G0043800 N
ORUFI12G05310 Oryza rufipogon ORUFI12G05310 N